RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 NDUFB10O96000 172 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 XRCC6P12956 609 aaKnown RBP eCLIP14.39□□□□□ -0.11
SMAD3-204ENST00000540846 KLRC3Q07444 240 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 TRIM29Q14134 588 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 SMC1BQ8NDV3 1235 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 GMCL1Q96IK5 515 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 VCPKMTQ9H867 229 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 AFG3L2Q9Y4W6 797 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 CSADQ9Y600 493 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 PLEKHA8P1O95397 391 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 ZNF543Q08ER8 600 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 DGKZQ13574 1117 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 TTLL12Q14166 644 aaPredicted RBP14.39□□□□□ -0.11
SMAD3-204ENST00000540846 MYSM1Q5VVJ2 828 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 USP17L2Q6R6M4 530 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 TMTC3Q6ZXV5 915 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 ZNF280CQ8ND82 737 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 ELP3Q9H9T3 547 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 RTEL1Q9NZ71 1219 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 ZHX2Q9Y6X8 837 aa14.39□□□□□ -0.11
SMAD3-204ENST00000540846 U2AF2P26368 475 aaKnown RBP eCLIP14.38□□□□□ -0.114e-6■■■□□ 18.9
SMAD3-204ENST00000540846 GJA5P36382 358 aa14.38□□□□□ -0.11
SMAD3-204ENST00000540846 SPP2Q13103 211 aa14.38□□□□□ -0.11
SMAD3-204ENST00000540846 MTMR2Q13614 643 aa14.38□□□□□ -0.11
SMAD3-204ENST00000540846 ERO1BQ86YB8 467 aa14.38□□□□□ -0.11
SMAD3-204ENST00000540846 PGBD1Q96JS3 809 aa14.38□□□□□ -0.11
SMAD3-204ENST00000540846 FTOQ9C0B1 505 aaKnown RBP eCLIP14.38□□□□□ -0.11
SMAD3-204ENST00000540846 POLR3EQ9NVU0 708 aa14.38□□□□□ -0.11
SMAD3-204ENST00000540846 CNTNAP5Q8WYK1 1306 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 GOLGA6L4A6NEF3 574 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 USP17L10C9JJH3 530 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 PRPF3O43395 683 aaKnown RBP14.37□□□□□ -0.11
SMAD3-204ENST00000540846 CYTH3O43739 400 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 LETM1O95202 739 aaPredicted RBP14.37□□□□□ -0.11
SMAD3-204ENST00000540846 YEATS4O95619 227 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 MMP1P03956 469 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 GOLGA8HP0CJ92 632 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 NASPP49321 788 aaPredicted RBP14.37□□□□□ -0.11
SMAD3-204ENST00000540846 BACE1P56817 501 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 PPATQ06203 517 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 ASPRV1Q53RT3 343 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 SLFN13Q68D06 897 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 CMTR1Q8N1G2 835 aaKnown RBP14.37□□□□□ -0.11
SMAD3-204ENST00000540846 SRBD1Q8N5C6 995 aaKnown RBP14.37□□□□□ -0.11
SMAD3-204ENST00000540846 CTCFLQ8NI51 663 aaPredicted RBP14.37□□□□□ -0.11
SMAD3-204ENST00000540846 DCAF4Q8WV16 495 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 C12orf42Q96LP6 360 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 NUP88Q99567 741 aaPredicted RBP14.37□□□□□ -0.11
SMAD3-204ENST00000540846 SH2D4AQ9H788 454 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 AS3MTQ9HBK9 375 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 EMILIN3Q9NT22 766 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 MTMR7Q9Y216 660 aa14.37□□□□□ -0.11
SMAD3-204ENST00000540846 PARP1P09874 1014 aaKnown RBP14.36□□□□□ -0.11
SMAD3-204ENST00000540846 KIF5BP33176 963 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 PPIL2Q13356 520 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 ZYXQ15942 572 aaKnown RBP14.36□□□□□ -0.11
SMAD3-204ENST00000540846 SH3D19Q5HYK7 790 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 SPICE1Q8N0Z3 855 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 C2orf69Q8N8R5 385 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 CPVLQ9H3G5 476 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 GOPCQ9HD26 462 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 KCNH4Q9UQ05 1017 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 A0A0G2JMZ2 1700 aa14.36□□□□□ -0.11
SMAD3-204ENST00000540846 FRMPD2Q68DX3 1309 aaPredicted RBP14.36□□□□□ -0.11
SMAD3-204ENST00000540846 TRIM75PA6NK02 468 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 KLRF2D3W0D1 207 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 IRF6O14896 467 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 LIG1P18858 919 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 CEBPZQ03701 1054 aaKnown RBP14.35□□□□□ -0.11
SMAD3-204ENST00000540846 MOGSQ13724 837 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 PKN1Q16512 942 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 GPATCH4Q5T3I0 446 aaKnown RBP14.35□□□□□ -0.11
SMAD3-204ENST00000540846 TTBK2Q6IQ55 1244 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 KCTD1Q719H9 257 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 LPAR1Q92633 364 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 OPTNQ96CV9 577 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 OTUD5Q96G74 571 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 FEZ1Q99689 392 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 SPZ1Q9BXG8 430 aa14.35□□□□□ -0.11
SMAD3-204ENST00000540846 DDX19AQ9NUU7 478 aaKnown RBP14.35□□□□□ -0.11
SMAD3-204ENST00000540846 COL11A1P12107 1806 aaPredicted RBP14.35□□□□□ -0.11
SMAD3-204ENST00000540846 VCAM1P19320 739 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 SLC1A4P43007 532 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 HMGCS2P54868 508 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 AKAP17AQ02040 695 aaKnown RBP14.34□□□□□ -0.11
SMAD3-204ENST00000540846 FSTL1Q12841 308 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 SAFBQ15424 915 aaKnown RBP eCLIP14.34□□□□□ -0.11
SMAD3-204ENST00000540846 BTNL9Q6UXG8 535 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 SAPCD2Q86UD0 394 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 CCDC82Q8N4S0 544 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 LINC00301Q8NCQ3 95 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 BICD2Q8TD16 824 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 KCNG4Q8TDN1 519 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 FOXP1Q9H334 677 aaPredicted RBP14.34□□□□□ -0.11
SMAD3-204ENST00000540846 RIOX1Q9H6W3 641 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 A0A0G2JLL6 359 aaPredicted RBP14.34□□□□□ -0.11
SMAD3-204ENST00000540846 C19orf81C9J6K1 198 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 WDR46O15213 610 aaKnown RBP14.34□□□□□ -0.11
SMAD3-204ENST00000540846 BMP3P12645 472 aa14.34□□□□□ -0.11
SMAD3-204ENST00000540846 SMARCA1P28370 1054 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms