RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 B4DLN1 442 aa14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 PDE6AP16499 860 aa14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 MTIF2P46199 727 aaKnown RBP14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 GSCP56915 257 aaPredicted RBP14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 GUCY1A3Q02108 690 aa14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 TBC1D8BQ0IIM8 1120 aa14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 PTGDRQ13258 359 aa14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 CCDC43Q96MW1 224 aaKnown RBP14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 NHEJ1Q9H9Q4 299 aaPredicted RBP14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 LRWD1Q9UFC0 647 aa14.33□□□□□ -0.11
SFSWAP-209ENST00000540469 GOLGA6L10A6NI86 522 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 A6NNZ2 444 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 PHKG2P15735 406 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 FECHP22830 423 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 NEDD9Q14511 834 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 TUBB8Q3ZCM7 444 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 TTC38Q5R3I4 469 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 AKNAD1Q5T1N1 836 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 FANCBQ8NB91 859 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 AENQ8WTP8 325 aaKnown RBP14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 ALS2CR12Q96Q35 445 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 NACAP1Q9BZK3 213 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 ARMT1Q9H993 441 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 DONSONQ9NYP3 566 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 GRIN2DO15399 1336 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 GOLGA6L7A0A1B0GV03 622 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 MINDY4BA8MYZ0 360 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 E7EVH7 732 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 BMP15O95972 392 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 MCM7P33993 719 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 STAT6P42226 847 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 PPP2R5AQ15172 486 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 CEP85LQ5SZL2 805 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 ZNF654Q8IZM8 581 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 FAM89AQ96GI7 184 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 SCLT1Q96NL6 688 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 PIH1D3Q9NQM4 214 aaKnown RBP14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 AGPAT5Q9NUQ2 364 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 LTN1O94822 1766 aa14.33□□□□□ -0.12
SFSWAP-209ENST00000540469 ANO9A1A5B4 782 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 H7C1D1 291 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 CHUKO15111 745 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 AKR1B10O60218 316 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 RPN1P04843 607 aaKnown RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 GUCY2FP51841 1108 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 ACTN3Q08043 901 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 IFNL3Q8IZI9 196 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 PRPF38AQ8NAV1 312 aaKnown RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 N4BP2L2Q92802 583 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 GTPBP6O43824 516 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 PRCPP42785 496 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 CCDC121Q6ZUS5 278 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 SPATA4Q8NEY3 305 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 TRIM58Q8NG06 486 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 PLIN2Q99541 437 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 PPANQ9NQ55 473 aaKnown RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 UBR1Q8IWV7 1749 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 NUTM2BA6NNL0 878 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 LGALS16A8MUM7 142 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 NUTM2EB1AL46 878 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 PSMA7O14818 248 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 SF3B2Q13435 895 aaKnown RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 ZNF658Q5TYW1 1059 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 ALS2CLQ60I27 953 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 KRT26Q7Z3Y9 468 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 SPATS2Q86XZ4 545 aaKnown RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 FNBP4Q8N3X1 1017 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 MAGEB6Q8N7X4 407 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 TSEN2Q8NCE0 465 aaKnown RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 IFIH1Q9BYX4 1025 aaKnown RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 EHD2Q9NZN4 543 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 STIM2Q9P246 746 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 V9GY48 417 aaPredicted RBP14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 XDHP47989 1333 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 WDR17Q8IZU2 1322 aa14.32□□□□□ -0.12
SFSWAP-209ENST00000540469 RCCD1A6NED2 376 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 MOCS3O95396 460 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 SCP2P22307 547 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 TTMPQ5BVD1 217 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 NFRKBQ6P4R8 1299 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 EMBQ6PCB8 327 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 ANKRD13CQ8N6S4 541 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 ZIM3Q96PE6 472 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 CCDC40Q4G0X9 1142 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 TYW1BQ6NUM6 668 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 LRP10Q7Z4F1 713 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 TSGA10Q9BZW7 698 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 MLXIPQ9HAP2 919 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 ODF2LQ9ULJ1 636 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 SNX12Q9UMY4 172 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 LSP1P33241 339 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 SEC24CP53992 1094 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 ODF2Q5BJF6 829 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 SH3RF1Q7Z6J0 888 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 BCCIPQ9P287 314 aaKnown RBP eCLIP14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 CAPN11Q9UMQ6 739 aa14.31□□□□□ -0.12
SFSWAP-209ENST00000540469 LMO7Q8WWI1 1683 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 RGPD2P0DJD1 1756 aa14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 AFDNP55196 1824 aaKnown RBP14.3□□□□□ -0.12
SFSWAP-209ENST00000540469 LRRC10BA6NIK2 292 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms