RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 C4orf32Q8N8J7 132 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 C6orf50Q9HD87 102 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 NRBP1Q9UHY1 535 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 FRMPD2Q68DX3 1309 aaPredicted RBP23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 PPIP5K2O43314 1243 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 SLFN14P0C7P3 912 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 EIF6P56537 245 aaKnown RBP23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 GRIPAP1Q4V328 841 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 SOGA3Q5TF21 947 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 KRT25Q7Z3Z0 450 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 CLEC10AQ8IUN9 316 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 PYM1Q9BRP8 204 aaKnown RBP23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 UBA5Q9GZZ9 404 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 VAT1LQ9HCJ6 419 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 FAM198AQ9UFP1 575 aa23.47■■□□□ 1.35
SMPDL3A-203ENST00000539041 GNA11P29992 359 aa23.46■■□□□ 1.35
SMPDL3A-203ENST00000539041 BAG6P46379 1132 aa23.46■■□□□ 1.35
SMPDL3A-203ENST00000539041 MYL5Q02045 173 aa23.46■■□□□ 1.35
SMPDL3A-203ENST00000539041 GRAMD1CQ8IYS0 662 aa23.46■■□□□ 1.35
SMPDL3A-203ENST00000539041 ESYT2A0FGR8 921 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 SMCO2A6NFE2 343 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 MPHOSPH10O00566 681 aaKnown RBP23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 C21orf2O43822 256 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 SMC2O95347 1197 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 LONP1P36776 959 aaKnown RBP23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 CACNB3P54284 484 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 MORC3Q14149 939 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 IL17AQ16552 155 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 INF2Q27J81 1249 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 SH3RF1Q7Z6J0 888 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 DACH1Q9UI36 760 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 BMP6P22004 513 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 ZNF543Q08ER8 600 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 TCP10Q12799 353 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 SF3B2Q13435 895 aaKnown RBP23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 SPATA20Q8TB22 786 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 DNAJC18Q9H819 358 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 PI4KBQ9UBF8 816 aa23.45■■□□□ 1.34
SMPDL3A-203ENST00000539041 DDTLA6NHG4 134 aaPredicted RBP23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 YDJCA8MPS7 323 aa23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 NOLC1Q14978 699 aaKnown RBP eCLIP23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 CCDC144BQ3MJ40 725 aa23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 CCDC93Q567U6 631 aa23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 TTLL6Q8N841 843 aa23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 MLKLQ8NB16 471 aa23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 PAGE5Q96GU1 130 aa23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 PYCARDQ9ULZ3 195 aa23.44■■□□□ 1.34
SMPDL3A-203ENST00000539041 COL2A1P02458 1487 aaPredicted RBP23.43■■□□□ 1.34
SMPDL3A-203ENST00000539041 NONOQ15233 471 aaKnown RBP eCLIP23.43■■□□□ 1.34
SMPDL3A-203ENST00000539041 KIAA1524Q8TCG1 905 aa23.43■■□□□ 1.34
SMPDL3A-203ENST00000539041 PDGFDQ9GZP0 370 aaPredicted RBP23.43■■□□□ 1.34
SMPDL3A-203ENST00000539041 GPCPD1Q9NPB8 672 aa23.43■■□□□ 1.34
SMPDL3A-203ENST00000539041 LAD1O00515 517 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 MYO1BO43795 1136 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 NAP1L5Q96NT1 182 aaPredicted RBP23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 TRIM34Q9BYJ4 488 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 IFNKQ9P0W0 207 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 MYH7BA7E2Y1 1941 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 LMOD1P29536 600 aaPredicted RBP23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 AFMP43652 599 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 E2F4Q16254 413 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 CFAP100Q494V2 611 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 GPATCH4Q5T3I0 446 aaKnown RBP23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 SH3BP5LQ7L8J4 393 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 ZSCAN29Q8IWY8 852 aaPredicted RBP23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 IQUBQ8NA54 791 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 XPO4Q9C0E2 1151 aaKnown RBP23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 HSD3B7Q9H2F3 369 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 SPTLC3Q9NUV7 552 aa23.42■■□□□ 1.34
SMPDL3A-203ENST00000539041 TXLNAP40222 546 aa23.41■■□□□ 1.34
SMPDL3A-203ENST00000539041 FANCCQ00597 558 aa23.41■■□□□ 1.34
SMPDL3A-203ENST00000539041 CERKLQ49MI3 558 aaPredicted RBP23.41■■□□□ 1.34
SMPDL3A-203ENST00000539041 DTHD1Q6ZMT9 781 aa23.41■■□□□ 1.34
SMPDL3A-203ENST00000539041 RTKN2Q8IZC4 609 aa23.41■■□□□ 1.34
SMPDL3A-203ENST00000539041 ENTPD3O75355 529 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 SLURP2P0DP57 97 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 PRPHP41219 470 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 ATP2B2Q01814 1243 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 CCDC96Q2M329 555 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 PSMD1Q99460 953 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 TDRD3Q9H7E2 651 aaKnown RBP23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 ATRNL1Q5VV63 1379 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 NEMFO60524 1076 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 DPYDQ12882 1025 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 PPP1R18Q6NYC8 613 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 DEFB132Q7Z7B7 95 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 CACTINQ8WUQ7 758 aaKnown RBP23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 TMEM60Q9H2L4 133 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 NYAP2Q9P242 653 aa23.4■■□□□ 1.34
SMPDL3A-203ENST00000539041 FAM196BA6NMK8 535 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 LRMPQ12912 555 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 TATDN1Q6P1N9 297 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 PDXDC2PQ6P474 469 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 REXO1Q8N1G1 1221 aaKnown RBP23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 C17orf53Q8N3J3 647 aaPredicted RBP23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 SLC16A10Q8TF71 515 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 GSDMAQ96QA5 445 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 JMJD4Q9H9V9 463 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 IMPACTQ9P2X3 320 aa23.39■■□□□ 1.33
SMPDL3A-203ENST00000539041 PNMA6FA0A0J9YX94 578 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms