RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 SDCCAG8Q86SQ7 713 aaPredicted RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 IQCDQ96DY2 449 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 SEC31BQ9NQW1 1179 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 TPX2Q9ULW0 747 aaKnown RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 COL24A1Q17RW2 1714 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 PDS5AQ29RF7 1337 aaKnown RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 ZNF233A6NK53 670 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 FOXO3O43524 673 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 SYKP43405 635 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 KSR2Q6VAB6 950 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 AACSQ86V21 672 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 SGMS1Q86VZ5 419 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 NBPF5PQ86XG9 351 aaPredicted RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 CCDC170Q8IYT3 715 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 SH3TC2Q8TF17 1288 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 NOC3LQ8WTT2 800 aaKnown RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 PLCB1Q9NQ66 1216 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 SLC5A4Q9NY91 659 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 CAPN11Q9UMQ6 739 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 ZBTB12Q9Y330 459 aaPredicted RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 RNF225M0QZC1 329 aaPredicted RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 DNM1LO00429 736 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 SLC9C2Q5TAH2 1124 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 HAUS3Q68CZ6 603 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 TSEN2Q8NCE0 465 aaKnown RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 EHBP1Q8NDI1 1231 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 LINS1Q8NG48 757 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 AATFQ9NY61 560 aaKnown RBP eCLIP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 HMGB1P1B2RPK0 211 aaPredicted RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 PEX19P40855 299 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 TOB1P50616 345 aaPredicted RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 PNOCQ13519 176 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 BLMHQ13867 455 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 TBC1D25Q3MII6 688 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 MTHFD1LQ6UB35 978 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 ZSCAN29Q8IWY8 852 aaPredicted RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 ARMC2Q8NEN0 867 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 MICAL1Q8TDZ2 1067 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 NCSTNQ92542 709 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 SLC39A2Q9NP94 309 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 FAM217BQ9NTX9 383 aaPredicted RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 RNF14Q9UBS8 474 aa9.37□□□□□ -0.91
CSMD1-213ENST00000523488 DBNLQ9UJU6 430 aaKnown RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 SRPRBQ9Y5M8 271 aaKnown RBP9.37□□□□□ -0.91
CSMD1-213ENST00000523488 BTNL10A8MVZ5 291 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 MDH1P40925 334 aaKnown RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 POSTNQ15063 836 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 E2F5Q15329 346 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 HSP90AB2PQ58FF8 381 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 PIGWQ7Z7B1 504 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 KIAA1328Q86T90 577 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 AZIN2Q96A70 460 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 SEC62Q99442 399 aaKnown RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 TMBIM4Q9HC24 238 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 RPS6KA3P51812 740 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 SPRED3Q2MJR0 410 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 AGBL2Q5U5Z8 902 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 RSRC1Q96IZ7 334 aaKnown RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 PHLPP1O60346 1717 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 TEX33O43247 280 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 RPSAP08865 295 aaKnown RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 GCLCP48506 637 aaPredicted RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 SNCBQ16143 134 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 PDCD2Q16342 344 aaPredicted RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 ASTE1Q2TB18 679 aaPredicted RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 MFN1Q8IWA4 741 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 TLCD1Q96CP7 247 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 SUCLG2Q96I99 432 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 ZNF512BQ96KM6 892 aaPredicted RBP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 GSDMAQ96QA5 445 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 EHD4Q9H223 541 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.36□□□□□ -0.91
CSMD1-213ENST00000523488 SNX12Q9UMY4 172 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 NFE2L3Q9Y4A8 694 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 KCPQ6ZWJ8 1503 aa9.36□□□□□ -0.91
CSMD1-213ENST00000523488 NDUFA10O95299 355 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 FAM163BP0C2L3 166 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 PIM1P11309 404 aaPredicted RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 CD44P16070 742 aaKnown RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 HDGFP51858 240 aaKnown RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 ELF3P78545 371 aaPredicted RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 ITIH4Q14624 930 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 DPY19L2Q6NUT2 758 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 NLRP14Q86W24 1093 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 RASSF8Q8NHQ8 419 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 FAM163AQ96GL9 167 aaPredicted RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 BOLA2Q9H3K6 86 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 STRN4Q9NRL3 753 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 RWDD2AQ9UIY3 292 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 EID1Q9Y6B2 187 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 RGPD3A6NKT7 1758 aaPredicted RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 RGPD4Q7Z3J3 1758 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 ZMYND10O75800 440 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 ATP6V1G2O95670 118 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 ATP1A1P05023 1023 aaKnown RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 LBRQ14739 615 aaKnown RBP9.35□□□□□ -0.91
CSMD1-213ENST00000523488 CCDC121Q6ZUS5 278 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 IRF2BP1Q8IU81 584 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 TBC1D2BQ9UPU7 963 aa9.35□□□□□ -0.91
CSMD1-213ENST00000523488 SAR1BQ9Y6B6 198 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms