RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 NEDD1Q8NHV4 660 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 MTMR4Q9NYA4 1195 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 MYH1P12882 1939 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 CNTNAP1P78357 1384 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 TMEM232C9JQI7 657 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 LMAN1P49257 510 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 PLS1Q14651 629 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 DCAF15Q66K64 600 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 KRBA2Q6ZNG9 492 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 CDC37L1Q7L3B6 337 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 NBPF11Q86T75 865 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 ZCCHC17Q9NP64 241 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 CSADQ9Y600 493 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 STX6O43752 255 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 PFKFB2O60825 505 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 SUPT20HL1Q3ZLR7 823 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 NSUN7Q8NE18 718 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 BICD2Q8TD16 824 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 CLMNQ96JQ2 1002 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 ARHGEF10LQ9HCE6 1279 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 ZBTB21Q9ULJ3 1066 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 HPS5Q9UPZ3 1129 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 DOCK2Q92608 1830 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 TOP1P11387 765 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 KIF5BP33176 963 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 RCSD1Q6JBY9 416 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 KANSL2Q9H9L4 492 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 CCDC196A0A1B0GTZ2 297 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 BECN2A8MW95 431 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 HMGCS2P54868 508 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 MTMR2Q13614 643 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 SEC23AQ15436 765 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 TERF2Q15554 542 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 FAM83BQ5T0W9 1011 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 GADL1Q6ZQY3 521 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 TMEM179Q6ZVK1 233 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 ZNF274Q96GC6 653 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 MRIQ9BWK5 157 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 FBXO28Q9NVF7 368 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 SEC63Q9UGP8 760 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 ZDHHC9Q9Y397 364 aa9.9□□□□□ -0.82
LIMCH1-209ENST00000509277 KIF13BQ9NQT8 1826 aa9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 F5H6K3 240 aa9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 GOLGA6L19H0YKK7 550 aa9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 CDKL5O76039 1030 aa9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 CELF2O95319 508 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 KLRC3Q07444 240 aa9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 CDCA5Q96FF9 252 aa9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 CCDC17Q96LX7 622 aa9.9□□□□□ -0.83
LIMCH1-209ENST00000509277 DLEC1Q9Y238 1755 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 ZMYM6O95789 1325 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 CTDNEP1O95476 244 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 LIFRP42702 1097 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 NLRP5P59047 1200 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 ARID5BQ14865 1188 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 CEP135Q66GS9 1140 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 COA7Q96BR5 231 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 RABEP2Q9H5N1 569 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 HERC5Q9UII4 1024 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 A0A1W2PRG0 241 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 CAP2P40123 477 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 GABPAQ06546 454 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 PTPN14Q15678 1187 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 TEX35Q5T0J7 233 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 FAM83AQ86UY5 434 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 SRBD1Q8N5C6 995 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 RASGRP4Q8TDF6 673 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 PIGSQ96S52 555 aa9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIMCH1-209ENST00000509277 PHACTR2O75167 634 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 ASNSP08243 561 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 CAPN2P17655 700 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 ERCC6LQ2NKX8 1250 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 BRCA1P38398 1863 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 KIAA1551Q9HCM1 1747 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 PEX10O60683 326 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 SLFN14P0C7P3 912 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 SAFBQ15424 915 aaKnown RBP eCLIP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 ZRSR1Q15695 479 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 DGKHQ86XP1 1220 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 ERCC4Q92889 916 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 PGBD1Q96JS3 809 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 CWC22Q9HCG8 908 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 USP17L10C9JJH3 530 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 FLOT1O75955 427 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 NDUFB10O96000 172 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 PCP11498 1178 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 NAPAP54920 295 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 TROAPQ12815 778 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 TMED8Q6PL24 325 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 MNS1Q8NEH6 495 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 FTOQ9C0B1 505 aaKnown RBP eCLIP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 PLEKHA4Q9H4M7 779 aa9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 ABT1Q9ULW3 272 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-209ENST00000509277 PPARDQ03181 441 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 CUL4AQ13619 759 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 PNMA8AQ86V59 439 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 TEPSINQ96N21 525 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 PAGR1Q9BTK6 254 aa9.87□□□□□ -0.83
LIMCH1-209ENST00000509277 EPC1Q9H2F5 836 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms