RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 ATL3Q6DD88 541 aa5.93□□□□□ -1.46
USF3-202ENST00000478658 PPP1R42Q7Z4L9 355 aa5.93□□□□□ -1.46
USF3-202ENST00000478658 RELL1Q8IUW5 271 aa5.93□□□□□ -1.46
USF3-202ENST00000478658 FAM177A1Q8N128 213 aaPredicted RBP5.93□□□□□ -1.46
USF3-202ENST00000478658 PPWD1Q96BP3 646 aaKnown RBP5.93□□□□□ -1.46
USF3-202ENST00000478658 CCDC42Q96M95 316 aa5.93□□□□□ -1.46
USF3-202ENST00000478658 EYA3Q99504 573 aa5.93□□□□□ -1.46
USF3-202ENST00000478658 ADNPQ9H2P0 1102 aa5.93□□□□□ -1.46
USF3-202ENST00000478658 CLEC4MQ9H2X3 399 aaPredicted RBP5.93□□□□□ -1.46
USF3-202ENST00000478658 FBXL5Q9UKA1 691 aa5.93□□□□□ -1.46
USF3-202ENST00000478658 SBNO1A3KN83 1393 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 SPDYE2BA6NHP3 402 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 FOSP01100 380 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 SPDYE6P0CI01 402 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 MRPS15P82914 257 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 PPP2R5CQ13362 524 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TRIM50Q86XT4 487 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 BRF1Q92994 677 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 PDRG1Q9NUG6 133 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 NVLO15381 856 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 ALDH1L1O75891 902 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 GCLCP48506 637 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 CAPRIN2Q6IMN6 1127 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 LRRC49Q8IUZ0 686 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 UBLCP1Q8WVY7 318 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 TRIM47Q96LD4 638 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 GALNT8Q9NY28 637 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 CES2O00748 559 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TADA3O75528 432 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 RECQLP46063 649 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 RAB2AP61019 212 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TIGD7Q6NT04 549 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 RSRC2Q7L4I2 434 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 KCNH5Q8NCM2 988 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 MOSPD2Q8NHP6 518 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 RMDN1Q96DB5 314 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 COG4Q9H9E3 785 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 VTI1BQ9UEU0 232 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TPX2Q9ULW0 747 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 SPDYE16A6NNV3 312 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 KRT2P35908 639 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 NNTQ13423 1086 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 PDE3AQ14432 1141 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 NDUFA5Q16718 116 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 SPDYE2Q495Y8 402 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 SLFN12LQ6IEE8 588 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 ZNF804AQ7Z570 1209 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TRIM69Q86WT6 500 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 DZIP3Q86Y13 1208 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 TNIP2Q8NFZ5 429 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 RBM46Q8TBY0 533 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 RFT1Q96AA3 541 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 PPP1R2P1Q96PQ5 205 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 GEMIN8Q9NWZ8 242 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 MARCKSP29966 332 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 ECE1P42892 770 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 COPB1P53618 953 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 FOXD4L6Q3SYB3 417 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 ICE2Q659A1 982 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 KRT39Q6A163 491 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 KLHL24Q6TFL4 600 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 FOXD4L3Q6VB84 417 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 KCNG4Q8TDN1 519 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TUBGCP3Q96CW5 907 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 NAF1Q96HR8 494 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 FAM227BQ96M60 508 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 NBPF26B4DH59 902 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 CDH2P19022 906 aaPredicted RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 CYP2C19P33261 490 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 BIRC3Q13489 604 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 FSCBQ5H9T9 825 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TTC13Q8NBP0 860 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 NCOA7Q8NI08 942 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 KCNK9Q9NPC2 374 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 TRIM10Q9UDY6 481 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 PPP6R2O75170 966 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 ANXA11P50995 505 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 TRADDQ15628 312 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 HDDC2Q7Z4H3 204 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 ERICH1Q86X53 443 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 AFAP1Q8N556 730 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 RTL3Q8N8U3 475 aaKnown RBP5.92□□□□□ -1.46
USF3-202ENST00000478658 TTC16Q8NEE8 873 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 SIN3AQ96ST3 1273 aa5.92□□□□□ -1.46
USF3-202ENST00000478658 NUTM2FA1L443 756 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 CAPN9O14815 690 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 FIBPO43427 364 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 DYRK3O43781 588 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 STX2P32856 288 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 NUTM2GQ5VZR2 741 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 AP1ARQ63HQ0 302 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 CLCC1Q96S66 551 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 WDR17Q8IZU2 1322 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 ARHGAP6O43182 974 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 DMPKQ09013 629 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 TEKT3Q9BXF9 490 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 ARHGEF10LQ9HCE6 1279 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 PTCD1O75127 700 aaKnown RBP5.91□□□□□ -1.46
USF3-202ENST00000478658 SEMA3DO95025 777 aa5.91□□□□□ -1.46
USF3-202ENST00000478658 LAMB3Q13751 1172 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms