RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 RPS6KB1P23443 525 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 CTGFP29279 349 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 PSMC4P43686 418 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 FCGRTP55899 365 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 CCNA1P78396 465 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 CAP1Q01518 475 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 TROAPQ12815 778 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 IKQ13123 557 aaPredicted RBP13.97□□□□□ -0.17
VPS13D-204ENST00000469054 TMEM132BQ14DG7 1078 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 ARHGEF6Q15052 776 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 NFXL1Q6ZNB6 911 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 SGMS1Q86VZ5 419 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 REPS2Q8NFH8 660 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 TM6SF1Q9BZW5 370 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 ZSWIM6Q9HCJ5 1215 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 CCDC69A6NI79 296 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 ZBED4O75132 1171 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 ECM2O94769 699 aaPredicted RBP13.96□□□□□ -0.17
VPS13D-204ENST00000469054 FMNL1O95466 1100 aaPredicted RBP13.96□□□□□ -0.17
VPS13D-204ENST00000469054 GOLGA8HP0CJ92 632 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 SLC16A2P36021 539 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 ASPRV1Q53RT3 343 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 RUFY3Q7L099 469 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 CTU1Q7Z7A3 348 aaKnown RBP13.96□□□□□ -0.17
VPS13D-204ENST00000469054 NUP133Q8WUM0 1156 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 IL17RAQ96F46 866 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 SPATC1LQ9H0A9 340 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 EFCC1Q9HA90 598 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 SLC38A10Q9HBR0 1119 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 PRR12Q9ULL5 1215 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 TRIM17Q9Y577 477 aa13.96□□□□□ -0.17
VPS13D-204ENST00000469054 CTDP1Q9Y5B0 961 aaPredicted RBP13.96□□□□□ -0.17
VPS13D-204ENST00000469054 DDAH1O94760 285 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 GNRH1P01148 92 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 STAT3P40763 770 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 FGD1P98174 961 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 PLS1Q14651 629 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 GRM4Q14833 912 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 SYDE2Q5VT97 1194 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 Q6ZUG5 572 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 OTOP1Q7RTM1 612 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 CCAR1Q8IX12 1150 aaKnown RBP13.95□□□□□ -0.18
VPS13D-204ENST00000469054 ZNF654Q8IZM8 581 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 FBXL16Q8N461 479 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 TRIM47Q96LD4 638 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 MOV10L1Q9BXT6 1211 aaKnown RBP13.95□□□□□ -0.18
VPS13D-204ENST00000469054 PORCNQ9H237 461 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 SLC12A7Q9Y666 1083 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 CYP46A1Q9Y6A2 500 aa13.95□□□□□ -0.18
VPS13D-204ENST00000469054 PALM3A6NDB9 673 aaPredicted RBP13.94□□□□□ -0.18
VPS13D-204ENST00000469054 TNPO2O14787 897 aaKnown RBP13.94□□□□□ -0.18
VPS13D-204ENST00000469054 ATP2A1O14983 1001 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 HOXD10P28358 340 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 MAPK4P31152 587 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 OAZ1P54368 228 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 SYNE3Q6ZMZ3 975 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 CPXCR1Q8N123 301 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 STAG2Q8N3U4 1231 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 SHCBP1Q8NEM2 672 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 MAP3K14Q99558 947 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 MYL10Q9BUA6 226 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 AGXT2Q9BYV1 514 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 UPF3BQ9BZI7 483 aaKnown RBP13.94□□□□□ -0.18
VPS13D-204ENST00000469054 UBA5Q9GZZ9 404 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 MAD2L2Q9UI95 211 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 ZNF214Q9UL59 606 aaPredicted RBP13.94□□□□□ -0.18
VPS13D-204ENST00000469054 MYH4Q9Y623 1939 aa13.94□□□□□ -0.18
VPS13D-204ENST00000469054 SLC25A27O95847 323 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 CALM1P0DP23 149 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 CALM2P0DP24 149 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 CALM3P0DP25 149 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 ERCC3P19447 782 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 COL13A1Q5TAT6 717 aaPredicted RBP13.93□□□□□ -0.18
VPS13D-204ENST00000469054 GPR142Q7Z601 462 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 RIOX2Q8IUF8 465 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 COA7Q96BR5 231 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 TEX13BQ9BXU2 312 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 C22orf23Q9BZE7 217 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 RANBP17Q9H2T7 1088 aaKnown RBP13.93□□□□□ -0.18
VPS13D-204ENST00000469054 CPVLQ9H3G5 476 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 RAVER2Q9HCJ3 691 aaKnown RBP13.93□□□□□ -0.18
VPS13D-204ENST00000469054 SRRDQ9UH36 339 aa13.93□□□□□ -0.18
VPS13D-204ENST00000469054 ZNF536O15090 1300 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 KLRF2D3W0D1 207 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 RXRAP19793 462 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 KIF5BP33176 963 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 COPB2P35606 906 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 GNAQP50148 359 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 PRMT2P55345 433 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 SNAP25P60880 206 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 PKN2Q16513 984 aaKnown RBP13.92□□□□□ -0.18
VPS13D-204ENST00000469054 WDR78Q5VTH9 848 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 SNRNP48Q6IEG0 339 aaKnown RBP13.92□□□□□ -0.18
VPS13D-204ENST00000469054 CCDC174Q6PII3 467 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 APOA5Q6Q788 366 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 PLEKHH3Q7Z736 793 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 NCAPG2Q86XI2 1143 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 ADGRF4Q8IZF3 695 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 FANCBQ8NB91 859 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 CTCFLQ8NI51 663 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms