RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 STX8Q9UNK0 236 aa23.22■■□□□ 1.31
TSPAN4-209ENST00000409543 NR2E3Q9Y5X4 410 aa23.22■■□□□ 1.31
TSPAN4-209ENST00000409543 KCTD2Q14681 263 aa23.21■■□□□ 1.31
TSPAN4-209ENST00000409543 CWC27Q6UX04 472 aaKnown RBP23.21■■□□□ 1.31
TSPAN4-209ENST00000409543 SLC38A10Q9HBR0 1119 aa23.21■■□□□ 1.31
TSPAN4-209ENST00000409543 ZNFX1Q9P2E3 1918 aaKnown RBP23.21■■□□□ 1.31
TSPAN4-209ENST00000409543 NMT2O60551 498 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 MSCO60682 206 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 PCP11498 1178 aaKnown RBP23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 CYBAP13498 195 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 PDE4AP27815 886 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 SNRNP48Q6IEG0 339 aaKnown RBP23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 TRPV1Q8NER1 839 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 MAML3Q96JK9 1138 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 C11orf49Q9H6J7 331 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 TOMM22Q9NS69 142 aa23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 DDX20Q9UHI6 824 aaKnown RBP23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 CTDP1Q9Y5B0 961 aaPredicted RBP23.2■■□□□ 1.3
TSPAN4-209ENST00000409543 EVI5O60447 810 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 FDX1P10109 184 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 CNGA1P29973 690 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 SLC1A4P43007 532 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 OAZ1P54368 228 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 HAND2P61296 217 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 CHURC1Q8WUH1 139 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 TCP11L1Q9NUJ3 509 aa23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 DIS3Q9Y2L1 958 aaKnown RBP23.19■■□□□ 1.3
TSPAN4-209ENST00000409543 TMEM232C9JQI7 657 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 MCCP23508 829 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 STAT2P52630 851 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 RRP12Q5JTH9 1297 aaKnown RBP23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 AKNAD1Q5T1N1 836 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 FAM160B2Q86V87 743 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 CPXCR1Q8N123 301 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 STAG1Q8WVM7 1258 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 RIPK3Q9Y572 518 aa23.18■■□□□ 1.3
TSPAN4-209ENST00000409543 PLA2G6O60733 806 aa23.17■■□□□ 1.3
TSPAN4-209ENST00000409543 PGK2P07205 417 aa23.17■■□□□ 1.3
TSPAN4-209ENST00000409543 ZNF792Q3KQV3 632 aa23.17■■□□□ 1.3
TSPAN4-209ENST00000409543 RCSD1Q6JBY9 416 aa23.17■■□□□ 1.3
TSPAN4-209ENST00000409543 MFSD6Q6ZSS7 791 aa23.17■■□□□ 1.3
TSPAN4-209ENST00000409543 RAVER2Q9HCJ3 691 aaKnown RBP23.17■■□□□ 1.3
TSPAN4-209ENST00000409543 ISY1Q9ULR0 285 aaKnown RBP23.17■■□□□ 1.3
TSPAN4-209ENST00000409543 COL6A1P12109 1028 aa23.16■■□□□ 1.3
TSPAN4-209ENST00000409543 HABP4Q5JVS0 413 aaKnown RBP23.16■■□□□ 1.3
TSPAN4-209ENST00000409543 TTC22Q5TAA0 569 aa23.16■■□□□ 1.3
TSPAN4-209ENST00000409543 RNF41Q9H4P4 317 aaPredicted RBP23.16■■□□□ 1.3
TSPAN4-209ENST00000409543 FRMPD3Q5JV73 1810 aa23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 ZNF213O14771 459 aa23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 SLC34A2O95436 690 aa23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 SLC4A3P48751 1232 aa23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.15■■□□□ 1.35e-6■■■■■ 45.5
TSPAN4-209ENST00000409543 TBC1D10CQ8IV04 446 aa23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 DSCC1Q9BVC3 393 aa23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 NRBP1Q9UHY1 535 aa23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 COLQQ9Y215 455 aaPredicted RBP23.15■■□□□ 1.3
TSPAN4-209ENST00000409543 PFASO15067 1338 aa23.14■■□□□ 1.3
TSPAN4-209ENST00000409543 SEPT4O43236 478 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 TOP1P11387 765 aaKnown RBP23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 GSPT1P15170 499 aaKnown RBP23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 NT5C2P49902 561 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 IKQ13123 557 aaPredicted RBP23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 KCTD1Q719H9 257 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 CHST13Q8NET6 341 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 DCAF4Q8WV16 495 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 CHMP4CQ96CF2 233 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 DDX11Q96FC9 970 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 TTC14Q96N46 770 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 TINF2Q9BSI4 451 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 FBXO40Q9UH90 709 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 ALPK3Q96L96 1907 aa23.14■■□□□ 1.29
TSPAN4-209ENST00000409543 PLXNA1Q9UIW2 1896 aa23.13■■□□□ 1.29
TSPAN4-209ENST00000409543 DNAJC25-GNG10A0A024R161 153 aa23.13■■□□□ 1.29
TSPAN4-209ENST00000409543 PRAMEF19Q5SWL8 479 aa23.13■■□□□ 1.29
TSPAN4-209ENST00000409543 TMEM47Q9BQJ4 181 aa23.13■■□□□ 1.29
TSPAN4-209ENST00000409543 MSL3Q8N5Y2 521 aaKnown RBP23.12■■□□□ 1.29
TSPAN4-209ENST00000409543 ESR2Q92731 530 aa23.12■■□□□ 1.29
TSPAN4-209ENST00000409543 CTNNA3Q9UI47 895 aa23.12■■□□□ 1.29
TSPAN4-209ENST00000409543 PRR12Q9ULL5 1215 aa23.12■■□□□ 1.29
TSPAN4-209ENST00000409543 DNM1LO00429 736 aa23.11■■□□□ 1.29
TSPAN4-209ENST00000409543 RASGRP2Q7LDG7 609 aa23.11■■□□□ 1.29
TSPAN4-209ENST00000409543 ARRDC4Q8NCT1 418 aa23.11■■□□□ 1.29
TSPAN4-209ENST00000409543 MTMR7Q9Y216 660 aa23.11■■□□□ 1.29
TSPAN4-209ENST00000409543 ZNF536O15090 1300 aa23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 NEDD4P46934 1319 aa23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 LAMA4Q16363 1823 aa23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 IMMTQ16891 758 aaKnown RBP23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 CCDC96Q2M329 555 aa23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 TKFCQ3LXA3 575 aa23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 CHRDL2Q6WN34 429 aa23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 ZNF467Q7Z7K2 595 aaPredicted RBP23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 ANKRD35Q8N283 1001 aa23.1■■□□□ 1.29
TSPAN4-209ENST00000409543 MAMDC4Q6UXC1 1216 aa23.09■■□□□ 1.29
TSPAN4-209ENST00000409543 BTNL9Q6UXG8 535 aa23.09■■□□□ 1.29
TSPAN4-209ENST00000409543 C7orf61Q8IZ16 206 aa23.09■■□□□ 1.29
TSPAN4-209ENST00000409543 AGBL1Q96MI9 1066 aa23.09■■□□□ 1.29
TSPAN4-209ENST00000409543 IL25Q9H293 177 aa23.09■■□□□ 1.29
TSPAN4-209ENST00000409543 ACAD9Q9H845 621 aa23.09■■□□□ 1.29
TSPAN4-209ENST00000409543 RAD50Q92878 1312 aa23.08■■□□□ 1.29
TSPAN4-209ENST00000409543 SYNGAP1Q96PV0 1343 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms