RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 CUL4BQ13620 913 aa10.28□□□□□ -0.76
TDP1-202ENST00000393452 CFAP100Q494V2 611 aa10.28□□□□□ -0.76
TDP1-202ENST00000393452 APOBEC3HQ6NTF7 200 aaKnown RBP10.28□□□□□ -0.76
TDP1-202ENST00000393452 USP17L2Q6R6M4 530 aa10.28□□□□□ -0.76
TDP1-202ENST00000393452 PODNQ7Z5L7 613 aa10.28□□□□□ -0.76
TDP1-202ENST00000393452 CCDC12Q8WUD4 166 aaPredicted RBP10.28□□□□□ -0.76
TDP1-202ENST00000393452 MTRQ99707 1265 aa10.28□□□□□ -0.76
TDP1-202ENST00000393452 INTS13Q9NVM9 706 aa10.28□□□□□ -0.76
TDP1-202ENST00000393452 SWAP70Q9UH65 585 aa10.28□□□□□ -0.76
TDP1-202ENST00000393452 ZNF646O15015 1829 aaPredicted RBP10.27□□□□□ -0.76
TDP1-202ENST00000393452 ESYT2A0FGR8 921 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 F8W031 263 aaPredicted RBP10.27□□□□□ -0.77
TDP1-202ENST00000393452 LAD1O00515 517 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 PDHBP11177 359 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 PRPHP41219 470 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 PICALMQ13492 652 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 DOK7Q18PE1 504 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 NYAP1Q6ZVC0 841 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 RRP36Q96EU6 259 aaKnown RBP10.27□□□□□ -0.77
TDP1-202ENST00000393452 C16orf45Q96MC5 204 aaPredicted RBP10.27□□□□□ -0.77
TDP1-202ENST00000393452 MRIQ9BWK5 157 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 CPVLQ9H3G5 476 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 SERPINB13Q9UIV8 391 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 MTMR7Q9Y216 660 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 SCN9AQ15858 1988 aa10.27□□□□□ -0.77
TDP1-202ENST00000393452 TNS1Q9HBL0 1735 aaKnown RBP10.27□□□□□ -0.77
TDP1-202ENST00000393452 USP27XA6NNY8 438 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 USP17L5A8MUK1 530 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 hCG_1984214I3L0E3 225 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 AKR1B1P15121 316 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 CD44P16070 742 aaKnown RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 INF2Q27J81 1249 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 CDC42EP5Q6NZY7 148 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 KRT25Q7Z3Z0 450 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 CCAR2Q8N163 923 aaKnown RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 ZNF713Q8N859 430 aaPredicted RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 TEKT1Q969V4 418 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 MXD3Q9BW11 206 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 USP40Q9NVE5 1235 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 SLX4Q8IY92 1834 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 GTPBP6O43824 516 aaPredicted RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 TNNT1P13805 278 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 CASP1P29466 404 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 GNA11P29992 359 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 NAPAP54920 295 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 FKBP1AP62942 108 aaKnown RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 TPD52L1Q16890 204 aaPredicted RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 ASPRV1Q53RT3 343 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 TRMT44Q8IYL2 757 aaKnown RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 TMX4Q9H1E5 349 aaPredicted RBP10.26□□□□□ -0.77
TDP1-202ENST00000393452 TMEM60Q9H2L4 133 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 TMX1Q9H3N1 280 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 MYH4Q9Y623 1939 aa10.26□□□□□ -0.77
TDP1-202ENST00000393452 SMCO2A6NFE2 343 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 PPP1R3GB7ZBB8 358 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 TMEM232C9JQI7 657 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 SHMT1P34896 483 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 TXLNAP40222 546 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 SCNN1DP51172 638 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 TBX2Q13207 712 aaPredicted RBP10.25□□□□□ -0.77
TDP1-202ENST00000393452 SPATA1Q5VX52 437 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 E4F1Q66K89 784 aaPredicted RBP10.25□□□□□ -0.77
TDP1-202ENST00000393452 STYK1Q6J9G0 422 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 DTHD1Q6ZMT9 781 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 ZDHHC15Q96MV8 337 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 PIGSQ96S52 555 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 CCSER1Q9C0I3 900 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 EHD4Q9H223 541 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 C6orf50Q9HD87 102 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 DISC1Q9NRI5 854 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 SAMSN1Q9NSI8 373 aaKnown RBP10.25□□□□□ -0.77
TDP1-202ENST00000393452 SEC63Q9UGP8 760 aaKnown RBP10.25□□□□□ -0.77
TDP1-202ENST00000393452 SIPA1L1O43166 1804 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 PSDA5PKW4 1024 aaPredicted RBP10.25□□□□□ -0.77
TDP1-202ENST00000393452 TTLL1O95922 423 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 ORC2Q13416 577 aaPredicted RBP10.25□□□□□ -0.77
TDP1-202ENST00000393452 NONOQ15233 471 aaKnown RBP eCLIP10.25□□□□□ -0.77
TDP1-202ENST00000393452 APTXQ7Z2E3 356 aaKnown RBP10.25□□□□□ -0.77
TDP1-202ENST00000393452 CCDC112Q8NEF3 446 aa10.25□□□□□ -0.77
TDP1-202ENST00000393452 UPF1Q92900 1129 aaKnown RBP eCLIP10.25□□□□□ -0.77
TDP1-202ENST00000393452 RIOK3O14730 519 aaKnown RBP10.24□□□□□ -0.77
TDP1-202ENST00000393452 NRDCO43847 1150 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 CRKP46108 304 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 HDLBPQ00341 1268 aaKnown RBP10.24□□□□□ -0.77
TDP1-202ENST00000393452 NAALADL2Q58DX5 795 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 STRIP1Q5VSL9 837 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 CDKAL1Q5VV42 579 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 HOMER1Q86YM7 354 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 UBA5Q9GZZ9 404 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 PAXBP1Q9Y5B6 917 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 SYNRGQ9UMZ2 1314 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 A0A1B0GTH6 734 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 MYL1P05976 194 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 CDK11BP21127 795 aaKnown RBP10.24□□□□□ -0.77
TDP1-202ENST00000393452 CDC25AP30304 524 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 NFIAQ12857 509 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 NR1I3Q14994 352 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 KARSQ15046 597 aaKnown RBP10.24□□□□□ -0.77
TDP1-202ENST00000393452 PTPN14Q15678 1187 aa10.24□□□□□ -0.77
TDP1-202ENST00000393452 DACT2Q5SW24 774 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms