RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 RNF4P78317 190 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 ZNF648Q5T619 568 aaPredicted RBP6.62□□□□□ -1.35
USP48-202ENST00000374730 LDLRAD1Q5T700 205 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 VWCEQ96DN2 955 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 KIF2CQ99661 725 aa6.62□□□□□ -1.35
USP48-202ENST00000374730 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.62□□□□□ -1.35
USP48-202ENST00000374730 CCDC141Q6ZP82 1450 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 KIAA1107Q9UPP5 1409 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 DNAJC25-GNG10A0A024R161 153 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 PLEKHD1A6NEE1 506 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 LRRC10BA6NIK2 292 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 WASH4PA8MWX3 477 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 LRRN2O75325 713 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 RAG1P15918 1043 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 GBP1P32455 592 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 CHMP4BP1P59074 171 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 DDX10Q13206 875 aaKnown RBP6.61□□□□□ -1.35
USP48-202ENST00000374730 ARSHQ5FYA8 562 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 TMEM67Q5HYA8 995 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 RALGPS1Q5JS13 557 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 CDCP2Q5VXM1 449 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 TTC6Q86TZ1 520 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 TMEM87AQ8NBN3 555 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 BHLHE22Q8NFJ8 381 aaPredicted RBP6.61□□□□□ -1.35
USP48-202ENST00000374730 FAM84AQ96KN4 292 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 NT5C1AQ9BXI3 368 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 UNC13BO14795 1591 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 PLXNC1O60486 1568 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 TTC37Q6PGP7 1564 aa6.61□□□□□ -1.35
USP48-202ENST00000374730 ANKRD50Q9ULJ7 1429 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 UBOX5O94941 541 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 HPXP02790 462 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 LTKP29376 864 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 CCNFP41002 786 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 MFAP1P55081 439 aaKnown RBP6.6□□□□□ -1.35
USP48-202ENST00000374730 EGR3Q06889 387 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 APOBRQ0VD83 1088 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 MESP2Q0VG99 397 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 OVOS1Q6IE37 1185 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 SLITRK4Q8IW52 837 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.6□□□□□ -1.35
USP48-202ENST00000374730 CNNM2Q9H8M5 875 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 METTL5Q9NRN9 209 aaKnown RBP6.6□□□□□ -1.35
USP48-202ENST00000374730 UBP1Q9NZI7 540 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 ARHGEF12Q9NZN5 1544 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 UHRF1BP1LA0JNW5 1464 aa6.6□□□□□ -1.35
USP48-202ENST00000374730 MEIS3P2A8K0S8 358 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 ZNF76P36508 570 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 ZNF165P49910 485 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 JAG1P78504 1218 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 RAD51AP2Q09MP3 1159 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 MLANAQ16655 118 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 SEZ6Q53EL9 994 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 KSR1Q8IVT5 923 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 ENOX1Q8TC92 643 aaKnown RBP6.59□□□□□ -1.35
USP48-202ENST00000374730 LIN37Q96GY3 246 aaPredicted RBP6.59□□□□□ -1.35
USP48-202ENST00000374730 SLC38A3Q99624 504 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 PCDHA11Q9Y5I1 949 aa6.59□□□□□ -1.35
USP48-202ENST00000374730 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.59□□□□□ -1.35
USP48-202ENST00000374730 PLEKHH2Q8IVE3 1493 aa6.59□□□□□ -1.36
USP48-202ENST00000374730 ZCCHC11Q5TAX3 1644 aaKnown RBP6.58□□□□□ -1.36
USP48-202ENST00000374730 ERCC6L2Q5T890 1561 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 ANP32CO43423 234 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 ZGLP1P0C6A0 271 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 HK2P52789 917 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 PKN1Q16512 942 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 LRRFIP1Q32MZ4 808 aaKnown RBP6.58□□□□□ -1.36
USP48-202ENST00000374730 MPZL3Q6UWV2 235 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 KIAA0825Q8IV33 1275 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 PDZD8Q8NEN9 1154 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 ABHD4Q8TB40 342 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 SYTL5Q8TDW5 730 aaPredicted RBP6.58□□□□□ -1.36
USP48-202ENST00000374730 MYLIPQ8WY64 445 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 DHX38Q92620 1227 aaKnown RBP6.58□□□□□ -1.36
USP48-202ENST00000374730 NKD1Q969G9 470 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 ATG4CQ96DT6 458 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 ASCC2Q9H1I8 757 aaPredicted RBP6.58□□□□□ -1.36
USP48-202ENST00000374730 ADAMTS10Q9H324 1103 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 SPATA31E1Q6ZUB1 1445 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 CNTLNQ9NXG0 1405 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 IQGAP3Q86VI3 1631 aa6.58□□□□□ -1.36
USP48-202ENST00000374730 ARAP3Q8WWN8 1544 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 SYCP2Q9BX26 1530 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 SHISA3A0PJX4 238 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 HSPA5P11021 654 aaKnown RBP6.57□□□□□ -1.36
USP48-202ENST00000374730 FANCCQ00597 558 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 CLCQ05315 142 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 FZD5Q13467 585 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 CLEC16AQ2KHT3 1053 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 NBPF12Q5TAG4 269 aaPredicted RBP6.57□□□□□ -1.36
USP48-202ENST00000374730 GK5Q6ZS86 529 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 NLRC3Q7RTR2 1065 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 LILRA2Q8N149 483 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 SYTL4Q96C24 671 aaPredicted RBP6.57□□□□□ -1.36
USP48-202ENST00000374730 SPON2Q9BUD6 331 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 KRTAP9-9Q9BYP9 154 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 KRTAP9-4Q9BYQ2 154 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 BACH2Q9BYV9 841 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 UHRF1BP1Q6BDS2 1440 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 KDM5CP41229 1560 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms