RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 TRAPPC11Q7Z392 1133 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 OR8K1Q8NGG5 319 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 TTLL11Q8NHH1 800 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 GSDMAQ96QA5 445 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 TUBB2BQ9BVA1 445 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 ABCF2Q9UG63 623 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 OVOS2A0A0G2JMS6 1433 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 CDHR2Q9BYE9 1310 aa8.84□□□□□ -0.99
VMA21-201ENST00000330374 RCCD1A6NED2 376 aa8.83□□□□□ -1
VMA21-201ENST00000330374 H0YHG0 523 aa8.83□□□□□ -1
VMA21-201ENST00000330374 PRPF6O94906 941 aaKnown RBP8.83□□□□□ -1
VMA21-201ENST00000330374 HERVK_113P62684 666 aa8.83□□□□□ -1
VMA21-201ENST00000330374 TOM1L2Q6ZVM7 507 aa8.83□□□□□ -1
VMA21-201ENST00000330374 KRT26Q7Z3Y9 468 aa8.83□□□□□ -1
VMA21-201ENST00000330374 ANKRD13CQ8N6S4 541 aa8.83□□□□□ -1
VMA21-201ENST00000330374 CTCFLQ8NI51 663 aaPredicted RBP8.83□□□□□ -1
VMA21-201ENST00000330374 SPATA20Q8TB22 786 aa8.83□□□□□ -1
VMA21-201ENST00000330374 CCDC51Q96ER9 411 aa8.83□□□□□ -1
VMA21-201ENST00000330374 TRIM47Q96LD4 638 aa8.83□□□□□ -1
VMA21-201ENST00000330374 AGPAT5Q9NUQ2 364 aa8.83□□□□□ -1
VMA21-201ENST00000330374 AATFQ9NY61 560 aaKnown RBP eCLIP8.83□□□□□ -1
VMA21-201ENST00000330374 FAM169AQ9Y6X4 670 aa8.83□□□□□ -1
VMA21-201ENST00000330374 B4DLN1 442 aa8.83□□□□□ -1
VMA21-201ENST00000330374 XBP1P17861 261 aa8.83□□□□□ -1
VMA21-201ENST00000330374 PRCPP42785 496 aa8.83□□□□□ -1
VMA21-201ENST00000330374 TTC38Q5R3I4 469 aa8.83□□□□□ -1
VMA21-201ENST00000330374 ZNF579Q8NAF0 562 aaKnown RBP8.83□□□□□ -1
VMA21-201ENST00000330374 BEGAINQ9BUH8 593 aa8.83□□□□□ -1
VMA21-201ENST00000330374 KRT23Q9C075 422 aa8.83□□□□□ -1
VMA21-201ENST00000330374 ANKRD18BA2A2Z9 1011 aa8.83□□□□□ -1
VMA21-201ENST00000330374 PARP1P09874 1014 aaKnown RBP8.83□□□□□ -1
VMA21-201ENST00000330374 UBE3CQ15386 1083 aa8.83□□□□□ -1
VMA21-201ENST00000330374 CCDC96Q2M329 555 aa8.83□□□□□ -1
VMA21-201ENST00000330374 WDR93Q6P2C0 686 aa8.83□□□□□ -1
VMA21-201ENST00000330374 PARP9Q8IXQ6 854 aa8.83□□□□□ -1
VMA21-201ENST00000330374 EFCAB13Q8IY85 973 aa8.83□□□□□ -1
VMA21-201ENST00000330374 RUFY1Q96T51 708 aa8.83□□□□□ -1
VMA21-201ENST00000330374 CCDC196A0A1B0GTZ2 297 aa8.83□□□□□ -1
VMA21-201ENST00000330374 CARNS1A5YM72 827 aa8.83□□□□□ -1
VMA21-201ENST00000330374 GSG1L2A8MUP6 293 aa8.83□□□□□ -1
VMA21-201ENST00000330374 GUCY2CP25092 1073 aa8.83□□□□□ -1
VMA21-201ENST00000330374 IRAK1P51617 712 aa8.83□□□□□ -1
VMA21-201ENST00000330374 PMS1P54277 932 aaKnown RBP8.83□□□□□ -1
VMA21-201ENST00000330374 MAP3K12Q12852 859 aa8.83□□□□□ -1
VMA21-201ENST00000330374 SH2D3CQ8N5H7 860 aa8.83□□□□□ -1
VMA21-201ENST00000330374 KAT2BQ92831 832 aa8.83□□□□□ -1
VMA21-201ENST00000330374 CAPS2Q9BXY5 557 aa8.83□□□□□ -1
VMA21-201ENST00000330374 LRP2BPQ9P2M1 347 aa8.83□□□□□ -1
VMA21-201ENST00000330374 TNKSO95271 1327 aa8.83□□□□□ -1
VMA21-201ENST00000330374 C4AP0C0L4 1744 aa8.83□□□□□ -1
VMA21-201ENST00000330374 C4BP0C0L5 1744 aa8.83□□□□□ -1
VMA21-201ENST00000330374 RPS6KA5O75582 802 aa8.82□□□□□ -1
VMA21-201ENST00000330374 NAP1L1P55209 391 aaKnown RBP8.82□□□□□ -1
VMA21-201ENST00000330374 PDCLQ13371 301 aa8.82□□□□□ -1
VMA21-201ENST00000330374 HLFQ16534 295 aa8.82□□□□□ -1
VMA21-201ENST00000330374 KIF6Q6ZMV9 814 aa8.82□□□□□ -1
VMA21-201ENST00000330374 NACAP1Q9BZK3 213 aa8.82□□□□□ -1
VMA21-201ENST00000330374 TRMT112Q9UI30 125 aaKnown RBP8.82□□□□□ -1
VMA21-201ENST00000330374 RIPOR2Q9Y4F9 1068 aa8.82□□□□□ -1
VMA21-201ENST00000330374 STK36Q9NRP7 1315 aa8.82□□□□□ -1
VMA21-201ENST00000330374 SHTN1A0MZ66 631 aa8.82□□□□□ -1
VMA21-201ENST00000330374 PP2D1A8MPX8 630 aa8.82□□□□□ -1
VMA21-201ENST00000330374 AGPSO00116 658 aa8.82□□□□□ -1
VMA21-201ENST00000330374 ANKRD18AQ8IVF6 992 aa8.82□□□□□ -1
VMA21-201ENST00000330374 MTRQ99707 1265 aa8.82□□□□□ -1
VMA21-201ENST00000330374 HAUS4Q9H6D7 363 aa8.82□□□□□ -1
VMA21-201ENST00000330374 CNNM2Q9H8M5 875 aa8.82□□□□□ -1
VMA21-201ENST00000330374 DMGDHQ9UI17 866 aaKnown RBP8.82□□□□□ -1
VMA21-201ENST00000330374 ARFGEF2Q9Y6D5 1785 aa8.82□□□□□ -1
VMA21-201ENST00000330374 A0A087WUV0 522 aaPredicted RBP8.82□□□□□ -1
VMA21-201ENST00000330374 KRT86O43790 486 aa8.82□□□□□ -1
VMA21-201ENST00000330374 RNASE9P60153 205 aaKnown RBP8.82□□□□□ -1
VMA21-201ENST00000330374 RASGRF1Q13972 1273 aa8.82□□□□□ -1
VMA21-201ENST00000330374 SPATA5Q8NB90 893 aa8.82□□□□□ -1
VMA21-201ENST00000330374 RASGRP4Q8TDF6 673 aa8.82□□□□□ -1
VMA21-201ENST00000330374 LRRC1Q9BTT6 524 aa8.82□□□□□ -1
VMA21-201ENST00000330374 CENPHQ9H3R5 247 aa8.82□□□□□ -1
VMA21-201ENST00000330374 ZNHIT6Q9NWK9 470 aaKnown RBP8.82□□□□□ -1
VMA21-201ENST00000330374 MAGEC2Q9UBF1 373 aaPredicted RBP8.82□□□□□ -1
VMA21-201ENST00000330374 LIMA1Q9UHB6 759 aaKnown RBP8.82□□□□□ -1
VMA21-201ENST00000330374 ADAMTS3O15072 1205 aa8.82□□□□□ -1
VMA21-201ENST00000330374 RPN1P04843 607 aaKnown RBP8.82□□□□□ -1
VMA21-201ENST00000330374 VEGFAP15692 232 aaPredicted RBP8.82□□□□□ -1
VMA21-201ENST00000330374 STAT6P42226 847 aa8.82□□□□□ -1
VMA21-201ENST00000330374 NLRP5P59047 1200 aa8.82□□□□□ -1
VMA21-201ENST00000330374 CCDC70Q6NSX1 233 aa8.82□□□□□ -1
VMA21-201ENST00000330374 CCNI2Q6ZMN8 369 aaPredicted RBP8.82□□□□□ -1
VMA21-201ENST00000330374 MLXIPQ9HAP2 919 aa8.82□□□□□ -1
VMA21-201ENST00000330374 MYO1AQ9UBC5 1043 aa8.82□□□□□ -1
VMA21-201ENST00000330374 LRWD1Q9UFC0 647 aa8.82□□□□□ -1
VMA21-201ENST00000330374 RGPD5Q99666 1765 aa8.82□□□□□ -1
VMA21-201ENST00000330374 PLEKP08567 350 aaPredicted RBP8.81□□□□□ -1
VMA21-201ENST00000330374 TUBB4BP68371 445 aa8.81□□□□□ -1
VMA21-201ENST00000330374 ARL8AQ96BM9 186 aa8.81□□□□□ -1
VMA21-201ENST00000330374 BRMS1Q9HCU9 246 aa8.81□□□□□ -1
VMA21-201ENST00000330374 CAPN7Q9Y6W3 813 aa8.81□□□□□ -1
VMA21-201ENST00000330374 TCRBV5S4A2TA0A5A2 114 aa8.81□□□□□ -1
VMA21-201ENST00000330374 IRS4O14654 1257 aaPredicted RBP8.81□□□□□ -1
VMA21-201ENST00000330374 NCK2O43639 380 aa8.81□□□□□ -1
VMA21-201ENST00000330374 PDE8BO95263 885 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms