RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 RIMS2Q9UQ26 1411 aa13.22□□□□□ -0.29
PCF11-201ENST00000298281 SKOR1P84550 965 aa13.22□□□□□ -0.29
PCF11-201ENST00000298281 SMAP1Q8IYB5 467 aaPredicted RBP13.21□□□□□ -0.29
PCF11-201ENST00000298281 PPHLN1Q8NEY8 458 aaKnown RBP13.21□□□□□ -0.29
PCF11-201ENST00000298281 P3H4Q92791 437 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 GCNAQ96QF7 691 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 SLC8A2Q9UPR5 921 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 CFAP221Q4G0U5 840 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 NME8Q8N427 588 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 CPSF3Q9UKF6 684 aaKnown RBP13.21□□□□□ -0.29
PCF11-201ENST00000298281 SESN3P58005 492 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 TTC38Q5R3I4 469 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 ZBTB40Q9NUA8 1239 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 EEF1B2P24534 225 aaKnown RBP13.21□□□□□ -0.29
PCF11-201ENST00000298281 SLC1A4P43007 532 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 ADCY7P51828 1080 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 RAB44Q7Z6P3 723 aaPredicted RBP13.21□□□□□ -0.29
PCF11-201ENST00000298281 BTN2A2Q8WVV5 523 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 PPWD1Q96BP3 646 aaKnown RBP13.21□□□□□ -0.29
PCF11-201ENST00000298281 RAB17Q9H0T7 212 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 POLKQ9UBT6 870 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 DAAM1Q9Y4D1 1078 aa13.21□□□□□ -0.29
PCF11-201ENST00000298281 ARHGAP6O43182 974 aa13.21□□□□□ -0.3
PCF11-201ENST00000298281 UFL1O94874 794 aa13.21□□□□□ -0.3
PCF11-201ENST00000298281 CWF19L2Q2TBE0 894 aaKnown RBP13.21□□□□□ -0.3
PCF11-201ENST00000298281 VPS16Q9H269 839 aa13.21□□□□□ -0.3
PCF11-201ENST00000298281 CCDC85BQ15834 202 aaPredicted RBP13.21□□□□□ -0.3
PCF11-201ENST00000298281 MIS12Q9H081 205 aa13.21□□□□□ -0.3
PCF11-201ENST00000298281 SPATS2LQ9NUQ6 558 aaKnown RBP13.21□□□□□ -0.3
PCF11-201ENST00000298281 ABCC1P33527 1531 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 RNMTO43148 476 aaKnown RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 USP26Q9BXU7 913 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 HERC4Q5GLZ8 1057 aaPredicted RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 KRT80Q6KB66 452 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 IFNLR1Q8IU57 520 aaPredicted RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 YTHDC2Q9H6S0 1430 aaKnown RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 UBXN8O00124 270 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 POLR2DO15514 142 aaKnown RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 GCNT3O95395 438 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 TNNI1P19237 187 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 OTUD6AQ7L8S5 288 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 IP6K1Q92551 441 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 TACO1Q9BSH4 297 aaKnown RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 METTL22Q9BUU2 404 aaPredicted RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 VPS37BQ9H9H4 285 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 CTTNBP2NLQ9P2B4 639 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 KDM3AQ9Y4C1 1321 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 HAUS1Q96CS2 278 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 RPS6KC1Q96S38 1066 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 GNPATO15228 680 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 KIAA1841Q6NSI8 718 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 MCUQ8NE86 351 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 MICAL1Q8TDZ2 1067 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 RABEP2Q9H5N1 569 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 LRWD1Q9UFC0 647 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 B4E1Z4 1266 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 LONP1P36776 959 aaKnown RBP13.2□□□□□ -0.3
PCF11-201ENST00000298281 USH1GQ495M9 461 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 PIK3AP1Q6ZUJ8 805 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 UIMC1Q96RL1 719 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 TRPC6Q9Y210 931 aa13.2□□□□□ -0.3
PCF11-201ENST00000298281 WBP4O75554 376 aaKnown RBP13.19□□□□□ -0.3
PCF11-201ENST00000298281 CALCRLQ16602 461 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 RASSF4Q9H2L5 321 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 MAGED2Q9UNF1 606 aaPredicted RBP13.19□□□□□ -0.3
PCF11-201ENST00000298281 FAN1Q9Y2M0 1017 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 TMEM247A6NEH6 219 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 SNX29Q8TEQ0 813 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 PAWRQ96IZ0 340 aaKnown RBP13.19□□□□□ -0.3
PCF11-201ENST00000298281 EXOC3O60645 756 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 GCP02774 474 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 CCDC105Q8IYK2 499 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 A2MP01023 1474 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 TRAPPC10P48553 1259 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 PIK3C2GO75747 1445 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 ITGA6P23229 1130 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 PHBP35232 272 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 MAGEA1P43355 309 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 STK32BQ9NY57 414 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 H0YCG3 227 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 RXRAP19793 462 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 TXKP42681 527 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 RPS6KA1Q15418 735 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 TAF11Q15544 211 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 TRIM60Q495X7 471 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 KRBA2Q6ZNG9 492 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 LPIN2Q92539 896 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 GSDMAQ96QA5 445 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 LRFN2Q9ULH4 789 aa13.19□□□□□ -0.3
PCF11-201ENST00000298281 SORBS3O60504 671 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 TROVE2P10155 538 aaKnown RBP eCLIP13.18□□□□□ -0.3
PCF11-201ENST00000298281 GOLGA5Q8TBA6 731 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 NLRP7Q8WX94 980 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 PAGR1Q9BTK6 254 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 V9GY48 417 aaPredicted RBP13.18□□□□□ -0.3
PCF11-201ENST00000298281 TNNI3KQ59H18 835 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 CPXCR1Q8N123 301 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 CCDC51Q96ER9 411 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 FPGT-TNNI3KV9GXZ4 949 aa13.18□□□□□ -0.3
PCF11-201ENST00000298281 RAD51AP2Q09MP3 1159 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms