RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 MMS19Q96T76 1030 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 ZMYM6O95789 1325 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 KIAA0232Q92628 1395 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 PDE6BP35913 854 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 POLR2FP61218 127 aaKnown RBP12.64□□□□□ -0.39
USP53-201ENST00000274030 SCRN1Q12765 414 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 DDX25Q9UHL0 483 aaKnown RBP12.64□□□□□ -0.39
USP53-201ENST00000274030 NPC1L1Q9UHC9 1359 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 A0A087WWV3 80 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 TMEM232C9JQI7 657 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 M0QZ92 97 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 OR52Z1P0C646 297 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 ATP11AP98196 1134 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 ICA1Q05084 483 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 POLA2Q14181 598 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 MCUR1Q96AQ8 359 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 ARMCX3Q9UH62 379 aaPredicted RBP12.64□□□□□ -0.39
USP53-201ENST00000274030 SWAP70Q9UH65 585 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 CSADQ9Y600 493 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 PLEKHG3A1L390 1219 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 PDIA3P30101 505 aaKnown RBP12.64□□□□□ -0.39
USP53-201ENST00000274030 INPP5BP32019 993 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 LIG4P49917 911 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 RASGRP4Q8TDF6 673 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 GJA10Q969M2 543 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 CARD10Q9BWT7 1032 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 RASSF4Q9H2L5 321 aa12.64□□□□□ -0.39
USP53-201ENST00000274030 ERCC6LQ2NKX8 1250 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 GBP6Q6ZN66 633 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 FBXO11Q86XK2 927 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 SYMPKQ92797 1274 aaKnown RBP12.63□□□□□ -0.39
USP53-201ENST00000274030 ZWINTO95229 277 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 PCK1P35558 622 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 TAOK1Q7L7X3 1001 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 FAM178BQ8IXR5 827 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 RPUSD2Q8IZ73 545 aaKnown RBP12.63□□□□□ -0.39
USP53-201ENST00000274030 PPM1KQ8N3J5 372 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 HOOK2Q96ED9 719 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 NOL3O60936 208 aaKnown RBP12.63□□□□□ -0.39
USP53-201ENST00000274030 IGBP1P78318 339 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 CFAP57Q96MR6 1250 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 RIOK1Q9BRS2 568 aaKnown RBP12.63□□□□□ -0.39
USP53-201ENST00000274030 DPH5Q9H2P9 285 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 MKRN1Q9UHC7 482 aaKnown RBP12.63□□□□□ -0.39
USP53-201ENST00000274030 DBNLQ9UJU6 430 aaKnown RBP12.63□□□□□ -0.39
USP53-201ENST00000274030 CLRN2A0PK11 232 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 POLR2MP0CAP2 368 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 DENND2CQ68D51 928 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 SESTD1Q86VW0 696 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 KDM3AQ9Y4C1 1321 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 PCCAP05165 728 aaPredicted RBP12.63□□□□□ -0.39
USP53-201ENST00000274030 NAA35Q5VZE5 725 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 GADL1Q6ZQY3 521 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 CEP128Q6ZU80 1094 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 ANKRD35Q8N283 1001 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 GPT2Q8TD30 523 aa12.63□□□□□ -0.39
USP53-201ENST00000274030 ATF7P17544 494 aaPredicted RBP12.62□□□□□ -0.39
USP53-201ENST00000274030 GNPTABQ3T906 1256 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 KRIT1O00522 736 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 GOLGA8FQ08AF8 430 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 GOLGA8DPQ0D2H9 430 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 SLFN13Q68D06 897 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 PLA2G4DQ86XP0 818 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 RSRC1Q96IZ7 334 aaKnown RBP12.62□□□□□ -0.39
USP53-201ENST00000274030 PCDHA1Q9Y5I3 950 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 KIAA0556O60303 1618 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 CMA1P23946 247 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 PI16Q6UXB8 463 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 PGBD1Q96JS3 809 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 ANTXR1Q9H6X2 564 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 ADCY9O60503 1353 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 PDE8BO95263 885 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 CNGA1P29973 690 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 ADAM9Q13443 819 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 NCAPG2Q86XI2 1143 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 RSAD2Q8WXG1 361 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 MED10Q9BTT4 135 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 TACC3Q9Y6A5 838 aa12.62□□□□□ -0.39
USP53-201ENST00000274030 RPN1P04843 607 aaKnown RBP12.61□□□□□ -0.39
USP53-201ENST00000274030 DYNLL1P63167 89 aaKnown RBP12.61□□□□□ -0.39
USP53-201ENST00000274030 NSMCE1Q8WV22 266 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 RILPQ96NA2 401 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 SEC31BQ9NQW1 1179 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 RTEL1Q9NZ71 1219 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 ANKFY1Q9P2R3 1169 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 SYNJ2BP-COX16A0A087WUM0 186 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 LOC102724428A0A0B4J2F2 783 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 LRRIQ4A6NIV6 560 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 CTNNA1P35221 906 aaKnown RBP12.61□□□□□ -0.39
USP53-201ENST00000274030 SIK1P57059 783 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 COX16Q9P0S2 106 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 GNA14O95837 355 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 ATP2B4P23634 1241 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 CCDC62Q6P9F0 684 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 ZNF589Q86UQ0 364 aaPredicted RBP12.61□□□□□ -0.39
USP53-201ENST00000274030 SMYD4Q8IYR2 804 aaPredicted RBP12.61□□□□□ -0.39
USP53-201ENST00000274030 TSKSQ9UJT2 592 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 PPP2R2CQ9Y2T4 447 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 ZNF804BA4D1E1 1349 aa12.61□□□□□ -0.39
USP53-201ENST00000274030 CRKLP46109 303 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms