RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ADAMTS5Q9UNA0 930 aa23.81■■□□□ 1.4
SS18-218ENST00000581021 STX8Q9UNK0 236 aa23.81■■□□□ 1.4
SS18-218ENST00000581021 TAF6LQ9Y6J9 622 aa23.81■■□□□ 1.4
SS18-218ENST00000581021 ELNP15502 786 aa23.8■■□□□ 1.4
SS18-218ENST00000581021 RUFY2Q8WXA3 655 aa23.8■■□□□ 1.4
SS18-218ENST00000581021 CHMP4CQ96CF2 233 aa23.8■■□□□ 1.4
SS18-218ENST00000581021 PPP1R9AQ9ULJ8 1098 aa23.8■■□□□ 1.4
SS18-218ENST00000581021 MYCP01106 439 aaPredicted RBP23.79■■□□□ 1.4
SS18-218ENST00000581021 IRF5Q13568 498 aa23.79■■□□□ 1.4
SS18-218ENST00000581021 SLFN13Q68D06 897 aa23.79■■□□□ 1.4
SS18-218ENST00000581021 RCSD1Q6JBY9 416 aa23.79■■□□□ 1.4
SS18-218ENST00000581021 GPR142Q7Z601 462 aa23.79■■□□□ 1.4
SS18-218ENST00000581021 REPS2Q8NFH8 660 aa23.79■■□□□ 1.4
SS18-218ENST00000581021 MOV10L1Q9BXT6 1211 aaKnown RBP23.79■■□□□ 1.4
SS18-218ENST00000581021 COL11A1P12107 1806 aaPredicted RBP23.78■■□□□ 1.4
SS18-218ENST00000581021 PCP11498 1178 aaKnown RBP23.78■■□□□ 1.4
SS18-218ENST00000581021 MAPK4P31152 587 aa23.78■■□□□ 1.4
SS18-218ENST00000581021 GRK4P32298 578 aa23.78■■□□□ 1.4
SS18-218ENST00000581021 TMEM132BQ14DG7 1078 aa23.78■■□□□ 1.4
SS18-218ENST00000581021 USP6NLQ92738 828 aa23.78■■□□□ 1.4
SS18-218ENST00000581021 SPATC1LQ9H0A9 340 aa23.78■■□□□ 1.4
SS18-218ENST00000581021 RNF41Q9H4P4 317 aaPredicted RBP23.78■■□□□ 1.4
SS18-218ENST00000581021 TCP11L1Q9NUJ3 509 aa23.78■■□□□ 1.4
SS18-218ENST00000581021 CTNNA3Q9UI47 895 aa23.78■■□□□ 1.4
SS18-218ENST00000581021 POTEFA5A3E0 1075 aa23.77■■□□□ 1.4
SS18-218ENST00000581021 VWA5AO00534 786 aa23.77■■□□□ 1.4
SS18-218ENST00000581021 ADCY3O60266 1144 aa23.77■■□□□ 1.4
SS18-218ENST00000581021 MTFR1Q15390 333 aa23.77■■□□□ 1.4
SS18-218ENST00000581021 IMMTQ16891 758 aaKnown RBP23.77■■□□□ 1.4
SS18-218ENST00000581021 MORN1Q5T089 497 aa23.77■■□□□ 1.4
SS18-218ENST00000581021 SLF1Q9BQI6 1058 aa23.77■■□□□ 1.4
SS18-218ENST00000581021 ESYT1Q9BSJ8 1104 aa23.77■■□□□ 1.4
SS18-218ENST00000581021 B4E1Z4 1266 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 KDM4AO75164 1064 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 CYP21A2P08686 494 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 PLEKHH3Q7Z736 793 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 MB21D1Q8N884 522 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 SLAIN1Q8ND83 568 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 GMCL1Q96IK5 515 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 TMEM47Q9BQJ4 181 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 ZKSCAN3Q9BRR0 538 aa23.76■■□□□ 1.39
SS18-218ENST00000581021 KIAA0100Q14667 2235 aaKnown RBP23.75■■□□□ 1.39
SS18-218ENST00000581021 CCNA1P78396 465 aa23.75■■□□□ 1.39
SS18-218ENST00000581021 ESR2Q92731 530 aa23.75■■□□□ 1.39
SS18-218ENST00000581021 LSG1Q9H089 658 aaKnown RBP23.75■■□□□ 1.39
SS18-218ENST00000581021 ZNF214Q9UL59 606 aaPredicted RBP23.75■■□□□ 1.39
SS18-218ENST00000581021 RBBP6Q7Z6E9 1792 aaKnown RBP23.75■■□□□ 1.39
SS18-218ENST00000581021 BMP3P12645 472 aa23.74■■□□□ 1.39
SS18-218ENST00000581021 MCCP23508 829 aa23.74■■□□□ 1.39
SS18-218ENST00000581021 RGS19P49795 217 aa23.74■■□□□ 1.39
SS18-218ENST00000581021 NBPF11Q86T75 865 aa23.74■■□□□ 1.39
SS18-218ENST00000581021 PXYLP1Q8TE99 480 aa23.74■■□□□ 1.39
SS18-218ENST00000581021 MAP4K1Q92918 833 aa23.74■■□□□ 1.39
SS18-218ENST00000581021 PPP4R2Q9NY27 417 aa23.74■■□□□ 1.39
SS18-218ENST00000581021 INHAP05111 366 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 ERCC3P19447 782 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 CYP2B6P20813 491 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 TRIM32Q13049 653 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 PLS1Q14651 629 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 PPP4R3BQ5MIZ7 849 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 WDR78Q5VTH9 848 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 STOX1Q6ZVD7 989 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 KCTD1Q719H9 257 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 SOCS4Q8WXH5 440 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 TRIB2Q92519 343 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 MTMR7Q9Y216 660 aa23.73■■□□□ 1.39
SS18-218ENST00000581021 RBM8AQ9Y5S9 174 aaKnown RBP23.73■■□□□ 1.39
SS18-218ENST00000581021 U3KPZ7 1027 aaPredicted RBP23.73■■□□□ 1.39
SS18-218ENST00000581021 MKI67P46013 3256 aaKnown RBP23.73■■□□□ 1.39
SS18-218ENST00000581021 TOP1P11387 765 aaKnown RBP23.72■■□□□ 1.39
SS18-218ENST00000581021 PTPREP23469 700 aa23.72■■□□□ 1.39
SS18-218ENST00000581021 SLC1A4P43007 532 aa23.72■■□□□ 1.39
SS18-218ENST00000581021 GRB14Q14449 540 aa23.72■■□□□ 1.39
SS18-218ENST00000581021 CCAR1Q8IX12 1150 aaKnown RBP23.72■■□□□ 1.39
SS18-218ENST00000581021 SHCBP1Q8NEM2 672 aa23.72■■□□□ 1.39
SS18-218ENST00000581021 KIFC2Q96AC6 838 aa23.72■■□□□ 1.39
SS18-218ENST00000581021 NUDT12Q9BQG2 462 aa23.72■■□□□ 1.39
SS18-218ENST00000581021 ZSWIM5Q9P217 1185 aa23.72■■□□□ 1.39
SS18-218ENST00000581021 ZNF236Q9UL36 1845 aa23.71■■□□□ 1.39
SS18-218ENST00000581021 TMEM232C9JQI7 657 aa23.71■■□□□ 1.39
SS18-218ENST00000581021 CCL14Q16627 93 aa23.71■■□□□ 1.39
SS18-218ENST00000581021 ERICH6BQ5W0A0 696 aa23.71■■□□□ 1.39
SS18-218ENST00000581021 CYB5R4Q7L1T6 521 aa23.71■■□□□ 1.39
SS18-218ENST00000581021 PRPF38AQ8NAV1 312 aaKnown RBP23.71■■□□□ 1.39
SS18-218ENST00000581021 FEM1BQ9UK73 627 aa23.71■■□□□ 1.39
SS18-218ENST00000581021 SLC15A5A6NIM6 579 aa23.7■■□□□ 1.38
SS18-218ENST00000581021 CCL5P13501 91 aa23.7■■□□□ 1.38
SS18-218ENST00000581021 COL9A3Q14050 684 aaPredicted RBP23.7■■□□□ 1.38
SS18-218ENST00000581021 RIOX2Q8IUF8 465 aa23.7■■□□□ 1.38
SS18-218ENST00000581021 ENAHQ8N8S7 591 aaPredicted RBP23.7■■□□□ 1.38
SS18-218ENST00000581021 UNC93B1Q9H1C4 597 aa23.7■■□□□ 1.38
SS18-218ENST00000581021 SLC38A10Q9HBR0 1119 aa23.7■■□□□ 1.38
SS18-218ENST00000581021 BIN2Q9UBW5 565 aaPredicted RBP23.7■■□□□ 1.38
SS18-218ENST00000581021 RIPK3Q9Y572 518 aa23.7■■□□□ 1.38
SS18-218ENST00000581021 XRCC5P13010 732 aaKnown RBP23.69■■□□□ 1.38
SS18-218ENST00000581021 EN2P19622 333 aaPredicted RBP23.69■■□□□ 1.38
SS18-218ENST00000581021 STAT3P40763 770 aa23.69■■□□□ 1.38
SS18-218ENST00000581021 MAP2K5Q13163 448 aa23.69■■□□□ 1.38
SS18-218ENST00000581021 TTBK2Q6IQ55 1244 aa23.69■■□□□ 1.38
SS18-218ENST00000581021 NCAPG2Q86XI2 1143 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms