RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 KLRC3Q07444 240 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 SLC35G1Q2M3R5 365 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 OTUD7BQ6GQQ9 843 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 ZKSCAN4Q969J2 545 aaPredicted RBP35.41■■■■□ 3.26
CTCF-203ENST00000566078 SPZ1Q9BXG8 430 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 CPVLQ9H3G5 476 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 SH2D4AQ9H788 454 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 GJB4Q9NTQ9 266 aa35.41■■■■□ 3.26
CTCF-203ENST00000566078 ISY1Q9ULR0 285 aaKnown RBP35.41■■■■□ 3.26
CTCF-203ENST00000566078 NDUFB10O96000 172 aa35.4■■■■□ 3.26
CTCF-203ENST00000566078 POTEIP0CG38 1075 aa35.4■■■■□ 3.26
CTCF-203ENST00000566078 POTEJP0CG39 1038 aa35.4■■■■□ 3.26
CTCF-203ENST00000566078 PKN1Q16512 942 aa35.4■■■■□ 3.26
CTCF-203ENST00000566078 GPATCH4Q5T3I0 446 aaKnown RBP35.4■■■■□ 3.26
CTCF-203ENST00000566078 PIBF1Q8WXW3 757 aa35.4■■■■□ 3.26
CTCF-203ENST00000566078 RBM27Q9P2N5 1060 aaKnown RBP35.4■■■■□ 3.26
CTCF-203ENST00000566078 CYTH3O43739 400 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 SLC1A4P43007 532 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 KCTD1Q719H9 257 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 FERMT3Q86UX7 667 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 FBXO18Q8NFZ0 1043 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 GOPCQ9HD26 462 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 USP2O75604 605 aaPredicted RBP35.39■■■■□ 3.26
CTCF-203ENST00000566078 TRIM29Q14134 588 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 GMCL1Q96IK5 515 aa35.39■■■■□ 3.26
CTCF-203ENST00000566078 SMARCA1P28370 1054 aa35.38■■■■□ 3.25
CTCF-203ENST00000566078 NF2P35240 595 aa35.38■■■■□ 3.25
CTCF-203ENST00000566078 UBA5Q9GZZ9 404 aa35.38■■■■□ 3.25
CTCF-203ENST00000566078 PICK1Q9NRD5 415 aa35.38■■■■□ 3.25
CTCF-203ENST00000566078 RGS22Q8NE09 1264 aa35.37■■■■□ 3.25
CTCF-203ENST00000566078 DDX55Q8NHQ9 600 aaKnown RBP eCLIP35.37■■■■□ 3.25
CTCF-203ENST00000566078 GBP4Q96PP9 640 aa35.37■■■■□ 3.25
CTCF-203ENST00000566078 PPP1R12BO60237 982 aaPredicted RBP35.36■■■■□ 3.25
CTCF-203ENST00000566078 KRT40Q6A162 431 aa35.36■■■■□ 3.25
CTCF-203ENST00000566078 FEZ1Q99689 392 aa35.36■■■■□ 3.25
CTCF-203ENST00000566078 ZYXQ15942 572 aaKnown RBP35.35■■■■□ 3.25
CTCF-203ENST00000566078 NOL9Q5SY16 702 aaKnown RBP35.35■■■■□ 3.25
CTCF-203ENST00000566078 MCTP1Q6DN14 999 aa35.35■■■■□ 3.25
CTCF-203ENST00000566078 TTBK2Q6IQ55 1244 aa35.35■■■■□ 3.25
CTCF-203ENST00000566078 NUP88Q99567 741 aaPredicted RBP35.35■■■■□ 3.25
CTCF-203ENST00000566078 PTPRFP10586 1907 aa35.35■■■■□ 3.25
CTCF-203ENST00000566078 SCG2P13521 617 aa35.35■■■■□ 3.25
CTCF-203ENST00000566078 PFKFB3Q16875 520 aaPredicted RBP35.35■■■■□ 3.25
CTCF-203ENST00000566078 FOXD4L6Q3SYB3 417 aaPredicted RBP35.35■■■■□ 3.25
CTCF-203ENST00000566078 FOXD4L3Q6VB84 417 aaPredicted RBP35.35■■■■□ 3.25
CTCF-203ENST00000566078 SPICE1Q8N0Z3 855 aa35.35■■■■□ 3.25
CTCF-203ENST00000566078 VCPKMTQ9H867 229 aa35.35■■■■□ 3.25
CTCF-203ENST00000566078 BAG4O95429 457 aaKnown RBP35.34■■■■□ 3.25
CTCF-203ENST00000566078 RESTQ13127 1097 aa35.34■■■■□ 3.25
CTCF-203ENST00000566078 MAP1SQ66K74 1059 aaPredicted RBP35.34■■■■□ 3.25
CTCF-203ENST00000566078 ZNF526Q8TF50 670 aaPredicted RBP35.34■■■■□ 3.25
CTCF-203ENST00000566078 RIOX1Q9H6W3 641 aa35.34■■■■□ 3.25
CTCF-203ENST00000566078 BMP3P12645 472 aa35.33■■■■□ 3.25
CTCF-203ENST00000566078 KIAA1755Q5JYT7 1200 aa35.33■■■■□ 3.25
CTCF-203ENST00000566078 CLEC17AQ6ZS10 378 aa35.33■■■■□ 3.25
CTCF-203ENST00000566078 RRP36Q96EU6 259 aaKnown RBP35.33■■■■□ 3.25
CTCF-203ENST00000566078 VAT1LQ9HCJ6 419 aa35.33■■■■□ 3.25
CTCF-203ENST00000566078 NMRK2Q9NPI5 230 aa35.33■■■■□ 3.25
CTCF-203ENST00000566078 VPS54Q9P1Q0 977 aa35.33■■■■□ 3.25
CTCF-203ENST00000566078 ATP6V1DQ9Y5K8 247 aa35.33■■■■□ 3.25
CTCF-203ENST00000566078 XBP1P17861 261 aa35.32■■■■□ 3.25
CTCF-203ENST00000566078 PTPRAP18433 802 aa35.32■■■■□ 3.25
CTCF-203ENST00000566078 AS3MTQ9HBK9 375 aa35.32■■■■□ 3.25
CTCF-203ENST00000566078 SLC16A2P36021 539 aa35.32■■■■□ 3.24
CTCF-203ENST00000566078 IREB2P48200 963 aaKnown RBP35.32■■■■□ 3.24
CTCF-203ENST00000566078 MAP3K9P80192 1104 aa35.32■■■■□ 3.24
CTCF-203ENST00000566078 NFKBIBQ15653 356 aa35.32■■■■□ 3.24
CTCF-203ENST00000566078 HOMER1Q86YM7 354 aa35.32■■■■□ 3.24
CTCF-203ENST00000566078 CHAMP1Q96JM3 812 aa35.32■■■■□ 3.24
CTCF-203ENST00000566078 PIGSQ96S52 555 aa35.31■■■■□ 3.24
CTCF-203ENST00000566078 ZSCAN16Q9H4T2 348 aaPredicted RBP35.31■■■■□ 3.24
CTCF-203ENST00000566078 SEC63Q9UGP8 760 aaKnown RBP35.31■■■■□ 3.24
CTCF-203ENST00000566078 KCNJ14Q9UNX9 436 aa35.31■■■■□ 3.24
CTCF-203ENST00000566078 PARP14Q460N5 1801 aa35.31■■■■□ 3.24
CTCF-203ENST00000566078 VGLL4Q14135 290 aa35.3■■■■□ 3.24
CTCF-203ENST00000566078 LDHDQ86WU2 507 aa35.3■■■■□ 3.24
CTCF-203ENST00000566078 ADGRF4Q8IZF3 695 aa35.3■■■■□ 3.24
CTCF-203ENST00000566078 SHISA4Q96DD7 197 aa35.3■■■■□ 3.24
CTCF-203ENST00000566078 TTLL12Q14166 644 aaPredicted RBP35.29■■■■□ 3.24
CTCF-203ENST00000566078 PPP1R3FQ6ZSY5 799 aaPredicted RBP35.29■■■■□ 3.24
CTCF-203ENST00000566078 GPKOWQ92917 476 aaPredicted RBP eCLIP35.29■■■■□ 3.24
CTCF-203ENST00000566078 WDR18Q9BV38 432 aa35.29■■■■□ 3.24
CTCF-203ENST00000566078 KIAA1683Q9H0B3 1180 aa35.29■■■■□ 3.24
CTCF-203ENST00000566078 TMEM232C9JQI7 657 aa35.28■■■■□ 3.24
CTCF-203ENST00000566078 MMP1P03956 469 aa35.28■■■■□ 3.24
CTCF-203ENST00000566078 FAM83BQ5T0W9 1011 aa35.28■■■■□ 3.24
CTCF-203ENST00000566078 JMJD4Q9H9V9 463 aa35.28■■■■□ 3.24
CTCF-203ENST00000566078 CSADQ9Y600 493 aa35.28■■■■□ 3.24
CTCF-203ENST00000566078 SNCAIPQ9Y6H5 919 aa35.28■■■■□ 3.24
CTCF-203ENST00000566078 KIF23Q02241 960 aaPredicted RBP35.28■■■■□ 3.24
CTCF-203ENST00000566078 IKQ13123 557 aaPredicted RBP35.28■■■■□ 3.24
CTCF-203ENST00000566078 USP17L10C9JJH3 530 aa35.27■■■■□ 3.24
CTCF-203ENST00000566078 MTMR2Q13614 643 aa35.27■■■■□ 3.24
CTCF-203ENST00000566078 WWC2Q6AWC2 1192 aa35.27■■■■□ 3.24
CTCF-203ENST00000566078 HEATR3Q7Z4Q2 680 aa35.27■■■■□ 3.24
CTCF-203ENST00000566078 ZNF280CQ8ND82 737 aa35.27■■■■□ 3.24
CTCF-203ENST00000566078 ZHX2Q9Y6X8 837 aa35.27■■■■□ 3.24
CTCF-203ENST00000566078 TRPM7Q96QT4 1865 aa35.27■■■■□ 3.24
CTCF-203ENST00000566078 TRAF5O00463 557 aa35.26■■■■□ 3.24
CTCF-203ENST00000566078 SPP2Q13103 211 aa35.26■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms