RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.82□□□□□ -1.16
VPS29-210ENST00000552130 METTL12A8MUP2 240 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 SMAD7O15105 426 aaKnown RBP7.82□□□□□ -1.16
VPS29-210ENST00000552130 MYL3P08590 195 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 NFKB2Q00653 900 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 COL9A2Q14055 689 aaPredicted RBP7.82□□□□□ -1.16
VPS29-210ENST00000552130 DDR2Q16832 855 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 TNNI3KQ59H18 835 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 CT47A1Q5JQC4 288 aaPredicted RBP7.82□□□□□ -1.16
VPS29-210ENST00000552130 HDGFL2Q7Z4V5 671 aaPredicted RBP7.82□□□□□ -1.16
VPS29-210ENST00000552130 SPICE1Q8N0Z3 855 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 CDC5LQ99459 802 aaKnown RBP7.82□□□□□ -1.16
VPS29-210ENST00000552130 DNAJC25Q9H1X3 360 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 ZNF69Q9UC07 566 aa7.82□□□□□ -1.16
VPS29-210ENST00000552130 FOXD3Q9UJU5 478 aaPredicted RBP7.82□□□□□ -1.16
VPS29-210ENST00000552130 RPGRIP1LQ68CZ1 1315 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 AKAP10O43572 662 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 USP17L7P0C7H9 530 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 ZNF423Q2M1K9 1284 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 TM4SF20Q53R12 229 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 CCDC70Q6NSX1 233 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 FBXO41Q8TF61 875 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 CAAP1Q9H8G2 361 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 FAM105AQ9NUU6 356 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 FAM8A1Q9UBU6 413 aa7.81□□□□□ -1.16
VPS29-210ENST00000552130 IFIT2P09913 472 aaKnown RBP7.8□□□□□ -1.16
VPS29-210ENST00000552130 VDRP11473 427 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 MYCLP1P12525 358 aaPredicted RBP7.8□□□□□ -1.16
VPS29-210ENST00000552130 SOX5P35711 763 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 SIM2Q14190 667 aaPredicted RBP7.8□□□□□ -1.16
VPS29-210ENST00000552130 C21orf62-AS1Q17RA5 79 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 ZKSCAN2Q63HK3 967 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 ERAP2Q6P179 960 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 SPRED2Q7Z698 418 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 MFSD3Q96ES6 412 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 EAF1Q96JC9 268 aaPredicted RBP7.8□□□□□ -1.16
VPS29-210ENST00000552130 ST7Q9NRC1 585 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 KCNG1Q9UIX4 513 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 PTCH2Q9Y6C5 1203 aa7.8□□□□□ -1.16
VPS29-210ENST00000552130 SLC26A4O43511 780 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 MAOBP27338 520 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 GUCY2FP51841 1108 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 NEK2P51955 445 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 ZNF792Q3KQV3 632 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 CCDC184Q52MB2 194 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 ALFQ53S48 1182 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 OGFOD3Q6PK18 319 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 CCNJLQ8IV13 435 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 JMYQ8N9B5 988 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 RSPH9Q9H1X1 276 aaPredicted RBP7.79□□□□□ -1.16
VPS29-210ENST00000552130 CLEC4MQ9H2X3 399 aaPredicted RBP7.79□□□□□ -1.16
VPS29-210ENST00000552130 ZFYVE28Q9HCC9 887 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 LRRC4CQ9HCJ2 640 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 MAPK8IP1Q9UQF2 711 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 SLC5A6Q9Y289 635 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 PPP2R3BQ9Y5P8 575 aa7.79□□□□□ -1.16
VPS29-210ENST00000552130 A0A096LPE4 126 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 A0A1W2PPZ6 126 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 DYNC1LI2O43237 492 aaPredicted RBP7.78□□□□□ -1.16
VPS29-210ENST00000552130 CYP11A1P05108 521 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 CASP2P42575 452 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 PCDH1Q08174 1060 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 POU4F3Q15319 338 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 MTERF2Q49AM1 385 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 FAM83BQ5T0W9 1011 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 ZNF648Q5T619 568 aaPredicted RBP7.78□□□□□ -1.16
VPS29-210ENST00000552130 PI16Q6UXB8 463 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 ZNF574Q6ZN55 896 aaPredicted RBP7.78□□□□□ -1.16
VPS29-210ENST00000552130 SMAP1Q8IYB5 467 aaPredicted RBP7.78□□□□□ -1.16
VPS29-210ENST00000552130 STK11IPQ8N1F8 1099 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 CCDC89Q8N998 374 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 SECISBP2LQ93073 1101 aaKnown RBP7.78□□□□□ -1.16
VPS29-210ENST00000552130 TCF12Q99081 682 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 TRIM56Q9BRZ2 755 aaKnown RBP7.78□□□□□ -1.16
VPS29-210ENST00000552130 RSRP1Q9BUV0 290 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 SRRTQ9BXP5 876 aaKnown RBP7.78□□□□□ -1.16
VPS29-210ENST00000552130 ASPSCR1Q9BZE9 553 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 FRMD4BQ9Y2L6 1034 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 SYNGAP1Q96PV0 1343 aa7.78□□□□□ -1.16
VPS29-210ENST00000552130 GOLGA6CA6NDK9 693 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 GOLGA6BA6NDN3 693 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 CPNE3O75131 537 aaKnown RBP7.77□□□□□ -1.17
VPS29-210ENST00000552130 KATNA1O75449 491 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 TCEA3O75764 348 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 TRIM37O94972 964 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 GOLGA6DP0CG33 693 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 RAB6AP20340 208 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 PWP1Q13610 501 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 MLC1Q15049 377 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 HP1BP3Q5SSJ5 553 aaPredicted RBP7.77□□□□□ -1.17
VPS29-210ENST00000552130 SPOCD1Q6ZMY3 1216 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 GET4Q7L5D6 327 aaPredicted RBP7.77□□□□□ -1.17
VPS29-210ENST00000552130 CREBRFQ8IUR6 639 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 NIM1KQ8IY84 436 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 ATL2Q8NHH9 583 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 CDH19Q9H159 772 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 GOLGA6AQ9NYA3 693 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 DAAM1Q9Y4D1 1078 aa7.77□□□□□ -1.17
VPS29-210ENST00000552130 DYTNA2CJ06 578 aa7.76□□□□□ -1.17
VPS29-210ENST00000552130 DBX1A6NMT0 343 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms