RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 UBL7Q96S82 380 aaPredicted RBP10.37□□□□□ -0.75
NUP54-215ENST00000514313 PRODHO43272 600 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 SPATA31C1P0DKV0 1188 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 MYCLP1P12525 358 aaPredicted RBP10.36□□□□□ -0.75
NUP54-215ENST00000514313 ETV3P41162 512 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 TRIM59Q8IWR1 403 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 FAM46AQ96IP4 442 aaKnown RBP10.36□□□□□ -0.75
NUP54-215ENST00000514313 CLUHP3Q96NS8 147 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 ASPNQ9BXN1 380 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 FAM126AQ9BYI3 521 aaPredicted RBP10.36□□□□□ -0.75
NUP54-215ENST00000514313 PRDM10Q9NQV6 1147 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 KLHL42Q9P2K6 505 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 EMC9Q9Y3B6 208 aa10.36□□□□□ -0.75
NUP54-215ENST00000514313 A0A087X0B3 334 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 NOP56O00567 594 aaKnown RBP10.35□□□□□ -0.75
NUP54-215ENST00000514313 PABPC1P11940 636 aaKnown RBP10.35□□□□□ -0.75
NUP54-215ENST00000514313 NOS3P29474 1203 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 FNDC3BQ53EP0 1204 aaKnown RBP10.35□□□□□ -0.75
NUP54-215ENST00000514313 SCUBE1Q8IWY4 988 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 BTN2A2Q8WVV5 523 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 EZH1Q92800 747 aaPredicted RBP10.35□□□□□ -0.75
NUP54-215ENST00000514313 OSBP2Q969R2 916 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 FBXL18Q96ME1 805 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 IER2Q9BTL4 223 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 YIPF2Q9BWQ6 316 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 MRPL4Q9BYD3 311 aaKnown RBP10.35□□□□□ -0.75
NUP54-215ENST00000514313 CGGBP1Q9UFW8 167 aaPredicted RBP10.35□□□□□ -0.75
NUP54-215ENST00000514313 AKT3Q9Y243 479 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 PCDHB12Q9Y5F1 795 aa10.35□□□□□ -0.75
NUP54-215ENST00000514313 CNGA1P29973 690 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 STAT3P40763 770 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 ZNF445P59923 1031 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 SUMO1P63165 101 aaKnown RBP10.34□□□□□ -0.75
NUP54-215ENST00000514313 CDK5R2Q13319 367 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 SNW1Q13573 536 aaKnown RBP10.34□□□□□ -0.75
NUP54-215ENST00000514313 NSMFQ6X4W1 530 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 STAG1Q8WVM7 1258 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 BRF1Q92994 677 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 ZNF775Q96BV0 537 aaPredicted RBP10.34□□□□□ -0.75
NUP54-215ENST00000514313 RCC1LQ96I51 464 aaKnown RBP10.34□□□□□ -0.75
NUP54-215ENST00000514313 DDX56Q9NY93 547 aaKnown RBP10.34□□□□□ -0.75
NUP54-215ENST00000514313 FBXL21Q9UKT6 434 aa10.34□□□□□ -0.75
NUP54-215ENST00000514313 CNTNAP5Q8WYK1 1306 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 PDE8AO60658 829 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 IREB2P48200 963 aaKnown RBP10.33□□□□□ -0.76
NUP54-215ENST00000514313 NBPF9Q3BBW0 867 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 SEZ6L2Q6UXD5 910 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 TREML4Q6UXN2 200 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 PODNQ7Z5L7 613 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 ARHGEF39Q8N4T4 335 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 TOP6BLQ8N6T0 577 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 CHAC2Q8WUX2 184 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 WFDC12Q8WWY7 111 aa10.33□□□□□ -0.76
NUP54-215ENST00000514313 KCNH1O95259 989 aa10.32□□□□□ -0.76
NUP54-215ENST00000514313 MAP7Q14244 749 aa10.32□□□□□ -0.76
NUP54-215ENST00000514313 PLEKHG6Q3KR16 790 aa10.32□□□□□ -0.76
NUP54-215ENST00000514313 CRACR2BQ8N4Y2 399 aaPredicted RBP10.32□□□□□ -0.76
NUP54-215ENST00000514313 PRDM14Q9GZV8 571 aa10.32□□□□□ -0.76
NUP54-215ENST00000514313 NOL6Q9H6R4 1146 aaKnown RBP10.32□□□□□ -0.76
NUP54-215ENST00000514313 FHOD1Q9Y613 1164 aa10.32□□□□□ -0.76
NUP54-215ENST00000514313 KCNQ2O43526 872 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 LRRN2O75325 713 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 EOMESO95936 686 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 C6orf222P0C671 652 aaPredicted RBP10.31□□□□□ -0.76
NUP54-215ENST00000514313 SDSP20132 328 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 POU3F3P20264 500 aaPredicted RBP10.31□□□□□ -0.76
NUP54-215ENST00000514313 PPP2R5DQ14738 602 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 UVSSAQ2YD98 709 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 NOL9Q5SY16 702 aaKnown RBP10.31□□□□□ -0.76
NUP54-215ENST00000514313 POMZP3Q6PJE2 187 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 JAMLQ86YT9 394 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 METTL14Q9HCE5 456 aaKnown RBP10.31□□□□□ -0.76
NUP54-215ENST00000514313 GFOD1Q9NXC2 390 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 SFMBT1Q9UHJ3 866 aa10.31□□□□□ -0.76
NUP54-215ENST00000514313 DNAJC25-GNG10A0A024R161 153 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 A0A087WZG4 1122 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 GSG1L2A8MUP6 293 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 C9orf172C9J069 976 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 MARCH6O60337 910 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 BMP3P12645 472 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 COL8A1P27658 744 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 MAP4P27816 1152 aaKnown RBP10.3□□□□□ -0.76
NUP54-215ENST00000514313 RXRBP28702 533 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 NRG1Q02297 640 aaPredicted RBP10.3□□□□□ -0.76
NUP54-215ENST00000514313 SF1Q15637 639 aaKnown RBP10.3□□□□□ -0.76
NUP54-215ENST00000514313 RNF180Q86T96 592 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 ARMC10Q8N2F6 343 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 FIBCD1Q8N539 461 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 SYTL5Q8TDW5 730 aaPredicted RBP10.3□□□□□ -0.76
NUP54-215ENST00000514313 UTP4Q969X6 686 aaKnown RBP10.3□□□□□ -0.76
NUP54-215ENST00000514313 MYRFLQ96LU7 910 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 CAAP1Q9H8G2 361 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 C1GALT1Q9NS00 363 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 TPX2Q9ULW0 747 aaKnown RBP10.3□□□□□ -0.76
NUP54-215ENST00000514313 CNTNAP4Q9C0A0 1308 aa10.3□□□□□ -0.76
NUP54-215ENST00000514313 DLX3O60479 287 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 CDKN1CP49918 316 aaPredicted RBP10.29□□□□□ -0.76
NUP54-215ENST00000514313 MBTPS1Q14703 1052 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 TRIM61Q5EBN2 209 aa10.29□□□□□ -0.76
NUP54-215ENST00000514313 GTF2IRD2BQ6EKJ0 949 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms