RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 TTC19Q6DKK2 380 aaPredicted RBP15.15■□□□□ 0.02
GPC1-209ENST00000495100 RAD9BQ6WBX8 426 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 MXD3Q9BW11 206 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 INTS13Q9NVM9 706 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 DDX41Q9UJV9 622 aaKnown RBP15.15■□□□□ 0.02
GPC1-209ENST00000495100 TCRBV5S4A2TA0A5A2 114 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 TBC1D10BQ4KMP7 808 aaPredicted RBP15.15■□□□□ 0.02
GPC1-209ENST00000495100 KANK3Q6NY19 840 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 CACNA2D4Q7Z3S7 1137 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 EXOC1Q9NV70 894 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 LUC7L2Q9Y383 392 aaKnown RBP15.15■□□□□ 0.02
GPC1-209ENST00000495100 RTCBQ9Y3I0 505 aaKnown RBP15.15■□□□□ 0.02
GPC1-209ENST00000495100 SRPRBQ9Y5M8 271 aaKnown RBP15.15■□□□□ 0.02
GPC1-209ENST00000495100 RGPD1P0DJD0 1748 aa15.15■□□□□ 0.02
GPC1-209ENST00000495100 FER1L4A9Z1Z3 1794 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 CTIFO43310 598 aaKnown RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 AKR1B10O60218 316 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 PLCD1P51178 756 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 TRIM28Q13263 835 aaKnown RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 AK7Q96M32 723 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 DCP1AQ9NPI6 582 aaPredicted RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 MST1RQ04912 1400 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 KLRF2D3W0D1 207 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 PNMA6AP0CW24 399 aaPredicted RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 KRT31Q15323 416 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 FOXP1Q9H334 677 aaPredicted RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 SEPT11Q9NVA2 429 aaKnown RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 TMEM260Q9NX78 707 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 RTL9Q8NET4 1388 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 IKBKBO14920 756 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 GTF2IP78347 998 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 PLS1Q14651 629 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 GRIK5Q16478 980 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 TYW1BQ6NUM6 668 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 INTS5Q6P9B9 1019 aaKnown RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 KLHL34Q8N239 644 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 VGLL2Q8N8G2 317 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 TC2NQ8N9U0 490 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 SMCR8Q8TEV9 937 aaPredicted RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 GOLGA1Q92805 767 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 FAM107BQ9H098 131 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 BMP2KQ9NSY1 1161 aaPredicted RBP15.14■□□□□ 0.01
GPC1-209ENST00000495100 PKD2L1Q9P0L9 805 aa15.14■□□□□ 0.01
GPC1-209ENST00000495100 PARP10Q53GL7 1025 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 ZNF34Q8IZ26 560 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 BLIDQ8IZY5 108 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 STAG1Q8WVM7 1258 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 PODXL2Q9NZ53 605 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 SLFN14P0C7P3 912 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 SGMS1Q86VZ5 419 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 ZNF804BA4D1E1 1349 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 CTAGE15A4D2H0 777 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 SMCO2A6NFE2 343 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 CTAGE8P0CG41 777 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 PRCPP42785 496 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 ZYXQ15942 572 aaKnown RBP15.13■□□□□ 0.01
GPC1-209ENST00000495100 CCDC181Q5TID7 509 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 MSL1Q68DK7 614 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 KRT26Q7Z3Y9 468 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 CTAGE6Q86UF2 777 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 CTAGE4Q8IX94 777 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 TMEM60Q9H2L4 133 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 PDE11AQ9HCR9 933 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 SMARCAL1Q9NZC9 954 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 JCADQ9P266 1359 aa15.13■□□□□ 0.01
GPC1-209ENST00000495100 PSMA7O14818 248 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 CAMTA2O94983 1202 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 RPN1P04843 607 aaKnown RBP15.12■□□□□ 0.01
GPC1-209ENST00000495100 ST5P78524 1137 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 DPYDQ12882 1025 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 SMC1AQ14683 1233 aaKnown RBP15.12■□□□□ 0.01
GPC1-209ENST00000495100 SPATA1Q5VX52 437 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 FCER1AP12319 257 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 MFSD14BQ5SR56 506 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.12■□□□□ 0.01
GPC1-209ENST00000495100 NOC4LQ9BVI4 516 aaKnown RBP15.12■□□□□ 0.01
GPC1-209ENST00000495100 SCAF8Q9UPN6 1271 aaKnown RBP15.12■□□□□ 0.01
GPC1-209ENST00000495100 RGPD5Q99666 1765 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 BUB1O43683 1085 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 BAG3O95817 575 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 GPS2Q13227 327 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 LLGL1Q15334 1064 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 UBE2SQ16763 222 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 CAMTA1Q9Y6Y1 1673 aa15.12■□□□□ 0.01
GPC1-209ENST00000495100 OVOS2A0A0G2JMS6 1433 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 PSDA5PKW4 1024 aaPredicted RBP15.11■□□□□ 0.01
GPC1-209ENST00000495100 USH1GQ495M9 461 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 MAEAQ7L5Y9 396 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 DNAAF5Q86Y56 855 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 PIGSQ96S52 555 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 RNF26Q9BY78 433 aaPredicted RBP15.11■□□□□ 0.01
GPC1-209ENST00000495100 ZNF446Q9NWS9 450 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 PPP1R1BQ9UD71 204 aaPredicted RBP15.11■□□□□ 0.01
GPC1-209ENST00000495100 TUBE1Q9UJT0 475 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 TAL1P17542 331 aaPredicted RBP15.11■□□□□ 0.01
GPC1-209ENST00000495100 COPB1P53618 953 aaKnown RBP15.11■□□□□ 0.01
GPC1-209ENST00000495100 SYCP1Q15431 976 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 CCDC40Q4G0X9 1142 aa15.11■□□□□ 0.01
GPC1-209ENST00000495100 PROCA1Q8NCQ7 364 aaPredicted RBP15.11■□□□□ 0.01
GPC1-209ENST00000495100 EYA3Q99504 573 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms