RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CCDC144CPQ8IYA2 1237 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 OR6P1Q8NGX9 317 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 SLC6A18Q96N87 628 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 SRRTQ9BXP5 876 aaKnown RBP3.48□□□□□ -1.85
HMGB1-208ENST00000490788 GPR62Q9BZJ7 368 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 ACBD3Q9H3P7 528 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 ANTXR1Q9H6X2 564 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 SEMA3GQ9NS98 782 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 GINM1Q9NU53 330 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 SLC12A7Q9Y666 1083 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 SHROOM4Q9ULL8 1493 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 TNFRSF10CO14798 259 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 PSPNO60542 156 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 LRRN2O75325 713 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 UBOX5O94941 541 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 SSBP05455 408 aaKnown RBP eCLIP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 RNASE1P07998 156 aaKnown RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 GUCY2CP25092 1073 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 SOX9P48436 509 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 EGR3Q06889 387 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 NMIQ13287 307 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 PPP2R5EQ16537 467 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 NOL9Q5SY16 702 aaKnown RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 NBPF12Q5TAG4 269 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 NFXL1Q6ZNB6 911 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 TSPYL5Q86VY4 417 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 ENOX1Q8TC92 643 aaKnown RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 DHX38Q92620 1227 aaKnown RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 SMARCC1Q92922 1105 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 SEC16BQ96JE7 1060 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 ZNF512BQ96KM6 892 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 Q96M66 194 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 ALPK1Q96QP1 1244 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 SLC9A7Q96T83 725 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 DSCC1Q9BVC3 393 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 DUSP15Q9H1R2 295 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-208ENST00000490788 PRDM7Q9NQW5 492 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 SLAMF8Q9P0V8 285 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 STRIP2Q9ULQ0 834 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 JAG2Q9Y219 1238 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 PCDHB12Q9Y5F1 795 aa3.47□□□□□ -1.85
HMGB1-208ENST00000490788 AFMP43652 599 aa3.46□□□□□ -1.86
HMGB1-208ENST00000490788 GJA8P48165 433 aa3.46□□□□□ -1.86
HMGB1-208ENST00000490788 PCBP3P57721 371 aaKnown RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 NBPF9Q3BBW0 867 aa3.46□□□□□ -1.86
HMGB1-208ENST00000490788 CWF19L1Q69YN2 538 aaKnown RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 ATG4DQ86TL0 474 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 TAB3Q8N5C8 712 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 RBBP8NLQ8NC74 664 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 LRRN4CLQ8ND94 238 aa3.46□□□□□ -1.86
HMGB1-208ENST00000490788 RASGRP4Q8TDF6 673 aa3.46□□□□□ -1.86
HMGB1-208ENST00000490788 ANAPC16Q96DE5 110 aa3.46□□□□□ -1.86
HMGB1-208ENST00000490788 MBNL3Q9NUK0 354 aaKnown RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 SUCOQ9UBS9 1254 aaKnown RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 R3HCC1Q9Y3T6 440 aaKnown RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 THOC2Q8NI27 1593 aaKnown RBP3.46□□□□□ -1.86
HMGB1-208ENST00000490788 TP53P04637 393 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 ENDOUP21128 410 aaKnown RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 RPL10P27635 214 aaKnown RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 HK2P52789 917 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 PMS1P54277 932 aaKnown RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 DUSP4Q13115 394 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 AUHQ13825 339 aaKnown RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 TCEAL1Q15170 157 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 KCNMB1Q16558 191 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 GNPTABQ3T906 1256 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 TDRD10Q5VZ19 366 aaKnown RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 UNC5AQ6ZN44 842 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 RUFY4Q6ZNE9 571 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 TTC6Q86TZ1 520 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 LSRQ86X29 649 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 TMEM192Q8IY95 271 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 OXR1Q8N573 874 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 ZNF655Q8N720 491 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 DAGLBQ8NCG7 672 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 SYTL5Q8TDW5 730 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.45□□□□□ -1.867e-8■□□□□ 9.7
HMGB1-208ENST00000490788 PHAXQ9H814 394 aaKnown RBP3.45□□□□□ -1.86
HMGB1-208ENST00000490788 CHST7Q9NS84 486 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 FAM86C1Q9NVL1 165 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 ZMYM5Q9UJ78 669 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 TMEM59LQ9UK28 342 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 ADAMTS6Q9UKP5 1117 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 PCDHA11Q9Y5I1 949 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 SMARCA2P51531 1590 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 SPATA31D1Q6ZQQ2 1576 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 HECW2Q9P2P5 1572 aa3.45□□□□□ -1.86
HMGB1-208ENST00000490788 SHISA3A0PJX4 238 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 DBX1A6NMT0 343 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 WASH4PA8MWX3 477 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 MEIS1O00470 390 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 SIGLEC6O43699 453 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 ESR1P03372 595 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 SYPP08247 313 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 NAT2P11245 290 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 SRFP11831 508 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 ATF4P18848 351 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-208ENST00000490788 DNAJA1P31689 397 aaKnown RBP3.44□□□□□ -1.86
HMGB1-208ENST00000490788 GDNFP39905 211 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 GIPRP48546 466 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms