RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 KIF5AQ12840 1032 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 CCDC93Q567U6 631 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 RNF26Q9BY78 433 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-228ENST00000486227 DBNDD1Q9H9R9 158 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.31□□□□□ -0.44
HDAC6-228ENST00000486227 INCENPQ9NQS7 918 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 KRT83P78385 493 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 PTGDRQ13258 359 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 DALRD3Q5D0E6 543 aaKnown RBP12.31□□□□□ -0.44
HDAC6-228ENST00000486227 DYNLL2Q96FJ2 89 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 XPO4Q9C0E2 1151 aaKnown RBP12.31□□□□□ -0.44
HDAC6-228ENST00000486227 SPTLC3Q9NUV7 552 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 NOD1Q9Y239 953 aa12.31□□□□□ -0.44
HDAC6-228ENST00000486227 SOS2Q07890 1332 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-228ENST00000486227 NEURL4Q96JN8 1562 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 IFNAR1P17181 557 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 ERCC3P19447 782 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 CERKLQ49MI3 558 aaPredicted RBP12.3□□□□□ -0.44
HDAC6-228ENST00000486227 HAUS3Q68CZ6 603 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 TBC1D5Q92609 795 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 TTC14Q96N46 770 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 GOPCQ9HD26 462 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 TAB2Q9NYJ8 693 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 RCOR1Q9UKL0 485 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 CEP170BQ9Y4F5 1589 aaPredicted RBP12.3□□□□□ -0.44
HDAC6-228ENST00000486227 TCP10L2B9ZVM9 353 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 FMNL1O95466 1100 aaPredicted RBP12.3□□□□□ -0.44
HDAC6-228ENST00000486227 NR5A1Q13285 461 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 TUBB2AQ13885 445 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 HERC4Q5GLZ8 1057 aaPredicted RBP12.3□□□□□ -0.44
HDAC6-228ENST00000486227 TUBB2BQ9BVA1 445 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 GJB4Q9NTQ9 266 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 KRT86O43790 486 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 CHGBP05060 677 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 PRDX5P30044 214 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 CDC25BP30305 580 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 LIFRP42702 1097 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 HLTFQ14527 1009 aaKnown RBP eCLIP12.3□□□□□ -0.44
HDAC6-228ENST00000486227 ZNF569Q5MCW4 686 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 NSMFQ6X4W1 530 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 ARHGEF1Q92888 912 aaKnown RBP12.3□□□□□ -0.44
HDAC6-228ENST00000486227 MRVI1Q9Y6F6 885 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 A0A1W2PQ27 194 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 A0A1W2PQ64 194 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 A0A1W2PQD8 194 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 PPP1R2P41236 205 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 RESTQ13127 1097 aa12.3□□□□□ -0.44
HDAC6-228ENST00000486227 SMC1AQ14683 1233 aaKnown RBP12.3□□□□□ -0.44
HDAC6-228ENST00000486227 MROH1Q8NDA8 1641 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 A0A087WWV3 80 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 ARHGAP6O43182 974 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 PHACTR2O75167 634 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 TACC1O75410 805 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 CCDC172P0C7W6 258 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 CA8P35219 290 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 DCAF17Q5H9S7 520 aaPredicted RBP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 CCDC91Q7Z6B0 441 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 TAX1BP1Q86VP1 789 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 TBC1D10CQ8IV04 446 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 TTLL6Q8N841 843 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 PPM1EQ8WY54 764 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 HOMER2Q9NSB8 354 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 RIPOR2Q9Y4F9 1068 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 NEFHP12036 1026 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 LINC00301Q8NCQ3 95 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 RASGRP4Q8TDF6 673 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 CTNNBL1Q8WYA6 563 aaPredicted RBP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 KIFC2Q96AC6 838 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 POLR3EQ9NVU0 708 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 TBC1D7Q9P0N9 293 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 GPR161Q8N6U8 529 aaKnown RBP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 USP32Q8NFA0 1604 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 NPR1P16066 1061 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 RPL13P26373 211 aaKnown RBP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 TECP42680 631 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 ETF1P62495 437 aaKnown RBP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 ICA1Q05084 483 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 TICAM2Q86XR7 235 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 CHURC1Q8WUH1 139 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 NELFBQ8WX92 580 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 NAA15Q9BXJ9 866 aaKnown RBP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 FOXP1Q9H334 677 aaPredicted RBP12.29□□□□□ -0.44
HDAC6-228ENST00000486227 PSTPIP2Q9H939 334 aa12.29□□□□□ -0.44
HDAC6-228ENST00000486227 DDX41Q9UJV9 622 aaKnown RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 PCDHA5Q9Y5H7 936 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 OPA1O60313 960 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 MYCLP12524 364 aaPredicted RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 ADRA2BP18089 450 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 MAP3K9P80192 1104 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 PABPC4Q13310 644 aaKnown RBP eCLIP12.28□□□□□ -0.442e-6■■■■□ 25.6
HDAC6-228ENST00000486227 TERF2Q15554 542 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 MKRN1Q9UHC7 482 aaKnown RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 DDX39AO00148 427 aaKnown RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 RHOXF2BP0C7M4 288 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 NEK8Q86SG6 692 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 RHOXF2Q9BQY4 288 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 OVOS2A0A0G2JMS6 1433 aa12.28□□□□□ -0.44
HDAC6-228ENST00000486227 IFI16Q16666 785 aaKnown RBP12.28□□□□□ -0.44
HDAC6-228ENST00000486227 SLC27A3Q5K4L6 730 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms