RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 PPP1R12AO14974 1030 aaPredicted RBP8.68□□□□□ -1.02
VPS50-212ENST00000476413 ASMTLO95671 621 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 GSK3AP49840 483 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 ZAR1Q86SH2 424 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 ARHGEF39Q8N4T4 335 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 DTWD2Q8NBA8 298 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 BVESQ8NE79 360 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 ADCY4Q8NFM4 1077 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 RCC1LQ96I51 464 aaKnown RBP8.68□□□□□ -1.02
VPS50-212ENST00000476413 SLC26A8Q96RN1 970 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 C7orf69Q9H7B7 122 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 TPX2Q9ULW0 747 aaKnown RBP8.68□□□□□ -1.02
VPS50-212ENST00000476413 EMC9Q9Y3B6 208 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 PCDHB12Q9Y5F1 795 aa8.68□□□□□ -1.02
VPS50-212ENST00000476413 A0A087WZG4 1122 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 PRR33A8MZF0 331 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 AGRPO00253 132 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 PPM1BO75688 479 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 CLSTN1O94985 981 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 ITGB2P05107 769 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 ITGA4P13612 1032 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 NCLP19338 710 aaKnown RBP8.67□□□□□ -1.02
VPS50-212ENST00000476413 GYS2P54840 703 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 ZC3H12BQ5HYM0 836 aaKnown RBP8.67□□□□□ -1.02
VPS50-212ENST00000476413 OGFOD3Q6PK18 319 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 C22orf34Q6ZV56 151 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 TMC3Q7Z5M5 1100 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 ADAT2Q7Z6V5 191 aaKnown RBP8.67□□□□□ -1.02
VPS50-212ENST00000476413 AARSD1Q9BTE6 412 aaKnown RBP8.67□□□□□ -1.02
VPS50-212ENST00000476413 PRDM5Q9NQX1 630 aaPredicted RBP8.67□□□□□ -1.02
VPS50-212ENST00000476413 PRR13Q9NZ81 148 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 CGGBP1Q9UFW8 167 aaPredicted RBP8.67□□□□□ -1.02
VPS50-212ENST00000476413 CD2APQ9Y5K6 639 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 FHOD1Q9Y613 1164 aa8.67□□□□□ -1.02
VPS50-212ENST00000476413 L1CAMP32004 1257 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 HSP90AA2PQ14568 343 aaPredicted RBP8.66□□□□□ -1.02
VPS50-212ENST00000476413 TCEA2Q15560 299 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 FAM209AQ5JX71 171 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 SFRP5Q5T4F7 317 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 TRIM59Q8IWR1 403 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 SYNPOQ8N3V7 929 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 SYTL5Q8TDW5 730 aaPredicted RBP8.66□□□□□ -1.02
VPS50-212ENST00000476413 BRF1Q92994 677 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 COX4I2Q96KJ9 171 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 TBC1D32Q96NH3 1257 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 RAXQ9Y2V3 346 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 SUGT1Q9Y2Z0 365 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 U3KQE9 123 aa8.66□□□□□ -1.02
VPS50-212ENST00000476413 TRAV20A0A0B4J274 112 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 RNF225M0QZC1 329 aaPredicted RBP8.65□□□□□ -1.02
VPS50-212ENST00000476413 ZNF865P0CJ78 1059 aaPredicted RBP8.65□□□□□ -1.02
VPS50-212ENST00000476413 FGFR1P11362 822 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 CYP7A1P22680 504 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 DALRD3Q5D0E6 543 aaKnown RBP8.65□□□□□ -1.02
VPS50-212ENST00000476413 PRR23CQ6ZRP0 262 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 OSBP2Q969R2 916 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 PPP1R14AQ96A00 147 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 GFOD1Q9NXC2 390 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 LRP2BPQ9P2M1 347 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 FBXL21Q9UKT6 434 aa8.65□□□□□ -1.02
VPS50-212ENST00000476413 SHISA3A0PJX4 238 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 FAM181BA6NEQ2 426 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 FAM170BA6NMN3 283 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 IGF2BP3O00425 579 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS50-212ENST00000476413 HSP90B1P14625 803 aaKnown RBP8.64□□□□□ -1.03
VPS50-212ENST00000476413 KIR3DL1P43629 444 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 CBX2Q14781 532 aaPredicted RBP8.64□□□□□ -1.03
VPS50-212ENST00000476413 ZNF765Q7L2R6 523 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 FIBCD1Q8N539 461 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 GIMAP7Q8NHV1 300 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 TP53INP1Q96A56 240 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 DHRS4Q9BTZ2 278 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 STOML1Q9UBI4 398 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 MINPP1Q9UNW1 487 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 AKT3Q9Y243 479 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 MRPS23Q9Y3D9 190 aaKnown RBP8.64□□□□□ -1.03
VPS50-212ENST00000476413 CAPN6Q9Y6Q1 641 aa8.64□□□□□ -1.03
VPS50-212ENST00000476413 CCDC163A0A0D9SF12 145 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 SIGLEC6O43699 453 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 CBX7O95931 251 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 GATA4P43694 442 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 TNK2Q07912 1038 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 CYP4F3Q08477 520 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 SF1Q15637 639 aaKnown RBP8.63□□□□□ -1.03
VPS50-212ENST00000476413 BTN2A2Q8WVV5 523 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 MFSD14AQ96MC6 490 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 NOL6Q9H6R4 1146 aaKnown RBP8.63□□□□□ -1.03
VPS50-212ENST00000476413 NCOA5Q9HCD5 579 aaKnown RBP8.63□□□□□ -1.03
VPS50-212ENST00000476413 IFT57Q9NWB7 429 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 PRKAB1Q9Y478 270 aa8.63□□□□□ -1.03
VPS50-212ENST00000476413 TRBV23-1A0A0A0MS06 115 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 PRAMEF1O95521 474 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 F13BP05160 661 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 PABPC1P11940 636 aaKnown RBP8.62□□□□□ -1.03
VPS50-212ENST00000476413 CTSKP43235 329 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 NOL9Q5SY16 702 aaKnown RBP8.62□□□□□ -1.03
VPS50-212ENST00000476413 GTF2IRD2BQ6EKJ0 949 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 FILIP1Q7Z7B0 1213 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 GTF2IRD2Q86UP8 949 aa8.62□□□□□ -1.03
VPS50-212ENST00000476413 SCUBE1Q8IWY4 988 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms