RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 CPLX3Q8WVH0 158 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 ZBTB9Q96C00 473 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 MKNK2Q9HBH9 465 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 ZNF277Q9NRM2 450 aaPredicted RBP10.82□□□□□ -0.68
CUX1-206ENST00000437600 STX8Q9UNK0 236 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 BCS1LQ9Y276 419 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 PCDHAC2Q9Y5I4 1007 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 ADKP55263 362 aaKnown RBP10.82□□□□□ -0.68
CUX1-206ENST00000437600 MDM2Q00987 491 aaPredicted RBP10.82□□□□□ -0.68
CUX1-206ENST00000437600 FUT2Q10981 343 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 E4F1Q66K89 784 aaPredicted RBP10.82□□□□□ -0.68
CUX1-206ENST00000437600 TEX11Q8IYF3 940 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 NOL10Q9BSC4 688 aaKnown RBP10.82□□□□□ -0.68
CUX1-206ENST00000437600 RTFDC1Q9BY42 306 aaPredicted RBP10.82□□□□□ -0.68
CUX1-206ENST00000437600 TMX4Q9H1E5 349 aaPredicted RBP10.82□□□□□ -0.68
CUX1-206ENST00000437600 VAT1LQ9HCJ6 419 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 ATP8A2Q9NTI2 1148 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 BCCIPQ9P287 314 aaKnown RBP eCLIP10.82□□□□□ -0.68
CUX1-206ENST00000437600 ANAPC4Q9UJX5 808 aa10.82□□□□□ -0.68
CUX1-206ENST00000437600 POSTNQ15063 836 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 RILPL1Q5EBL4 403 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 STYK1Q6J9G0 422 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 PLCD3Q8N3E9 789 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 CERS5Q8N5B7 392 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 C7orf43Q8WVR3 580 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 CNKSR1Q969H4 720 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 TUBE1Q9UJT0 475 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 MAN1B1Q9UKM7 699 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 BAG3O95817 575 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 SFPQP23246 707 aaKnown RBP eCLIP10.81□□□□□ -0.681e-6■■■■□ 20.4
CUX1-206ENST00000437600 CACNB3P54284 484 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 NLRP5P59047 1200 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 PTGDRQ13258 359 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 PPP4R3BQ5MIZ7 849 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 WASF1Q92558 559 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 SYMPKQ92797 1274 aaKnown RBP10.81□□□□□ -0.68
CUX1-206ENST00000437600 CCDC94Q9BW85 323 aaPredicted RBP10.81□□□□□ -0.68
CUX1-206ENST00000437600 FOXP1Q9H334 677 aaPredicted RBP10.81□□□□□ -0.68
CUX1-206ENST00000437600 IL17RBQ9NRM6 502 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 NFE2L3Q9Y4A8 694 aa10.81□□□□□ -0.68
CUX1-206ENST00000437600 IGSF3O75054 1194 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 CLEC10AQ8IUN9 316 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 UIMC1Q96RL1 719 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 ARPP21Q9UBL0 812 aaPredicted RBP10.8□□□□□ -0.68
CUX1-206ENST00000437600 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.8□□□□□ -0.683e-7■■■□□ 17.9
CUX1-206ENST00000437600 TRIM75PA6NK02 468 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 IL1R1P14778 569 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 MYL5Q02045 173 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 DMTNQ08495 405 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 C12orf60Q5U649 245 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 SYT10Q6XYQ8 523 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 KIAA0825Q8IV33 1275 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 CCAR2Q8N163 923 aaKnown RBP10.8□□□□□ -0.68
CUX1-206ENST00000437600 LRRN4CLQ8ND94 238 aa10.8□□□□□ -0.68
CUX1-206ENST00000437600 MKRN1Q9UHC7 482 aaKnown RBP10.8□□□□□ -0.68
CUX1-206ENST00000437600 TTF2Q9UNY4 1162 aaKnown RBP10.8□□□□□ -0.68
CUX1-206ENST00000437600 SMTNL1A8MU46 457 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 CHRM1P11229 460 aaPredicted RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 EIF6P56537 245 aaKnown RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 NPY5RQ15761 445 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 RCSD1Q6JBY9 416 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 CCDC112Q8NEF3 446 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 CTCFLQ8NI51 663 aaPredicted RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 INTS13Q9NVM9 706 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 ADAMTSL1Q8N6G6 1762 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 PDS5AQ29RF7 1337 aaKnown RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 CCDC88AQ3V6T2 1871 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 PP2D1A8MPX8 630 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 CD44P16070 742 aaKnown RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 CDC25BP30305 580 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 KRT2P35908 639 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 TYW1BQ6NUM6 668 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 HOMER1Q86YM7 354 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 SMARCE1Q969G3 411 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 PHF20Q9BVI0 1012 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 ZNF215Q9UL58 517 aaPredicted RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 SRPRBQ9Y5M8 271 aaKnown RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 PPIP5K2O43314 1243 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 TSPY3P0CV98 308 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 TSPY8P0CW00 308 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 RNF26Q9BY78 433 aaPredicted RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 FHDC1Q9C0D6 1143 aaPredicted RBP10.79□□□□□ -0.68
CUX1-206ENST00000437600 DAGLAQ9Y4D2 1042 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 KIAA1551Q9HCM1 1747 aa10.79□□□□□ -0.68
CUX1-206ENST00000437600 TEX33O43247 280 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 TPM4P67936 248 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 GSTO1P78417 241 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 IL17AQ16552 155 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 TIGD1Q96MW7 591 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 PIM2Q9P1W9 311 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 DLEC1Q9Y238 1755 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 FLT1P17948 1338 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 KIF13BQ9NQT8 1826 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 COL4A5P29400 1685 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 FAM196BA6NMK8 535 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 PRPF3O43395 683 aaKnown RBP10.78□□□□□ -0.68
CUX1-206ENST00000437600 ACTN4O43707 911 aaKnown RBP10.78□□□□□ -0.68
CUX1-206ENST00000437600 LDHCP07864 332 aa10.78□□□□□ -0.68
CUX1-206ENST00000437600 ZSCAN20P17040 1043 aaPredicted RBP10.78□□□□□ -0.68
CUX1-206ENST00000437600 RHBDL3P58872 404 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms