RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SMPD1P17405 629 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 EPHB1P54762 984 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 RASSF7Q02833 373 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 DMTNQ08495 405 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 ORC1Q13415 861 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 SQSTM1Q13501 440 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 LRRC41Q15345 812 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 TTF1Q15361 905 aaPredicted RBP5.46□□□□□ -1.54
SF3B1-202ENST00000409915 DALRD3Q5D0E6 543 aaKnown RBP5.46□□□□□ -1.54
SF3B1-202ENST00000409915 ZNF280DQ6N043 979 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 PRPF40BQ6NWY9 871 aaKnown RBP5.46□□□□□ -1.54
SF3B1-202ENST00000409915 SLC4A10Q6U841 1118 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 OLFM4Q6UX06 510 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 PPP1R42Q7Z4L9 355 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 GJD3Q8N144 294 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 PAF1Q8N7H5 531 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 DNAAF4Q8WXU2 420 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 GPKOWQ92917 476 aaPredicted RBP eCLIP5.46□□□□□ -1.543e-8■■■□□ 18.6
SF3B1-202ENST00000409915 ARHGAP9Q9BRR9 750 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 NYXQ9GZU5 481 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 AAASQ9NRG9 546 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 PIM2Q9P1W9 311 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 STRIP2Q9ULQ0 834 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 POLIQ9UNA4 740 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 EFR3BQ9Y2G0 817 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 LEMD3Q9Y2U8 911 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 DLEC1Q9Y238 1755 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 SH3TC1Q8TE82 1336 aa5.46□□□□□ -1.54
SF3B1-202ENST00000409915 DDX60Q8IY21 1712 aaKnown RBP5.45□□□□□ -1.54
SF3B1-202ENST00000409915 CACNA1SQ13698 1873 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 NEURL1BA8MQ27 555 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 IRS4O14654 1257 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-202ENST00000409915 CLGNO14967 610 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 AXIN1O15169 862 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 NPR1P16066 1061 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 RARSP54136 660 aaKnown RBP5.45□□□□□ -1.54
SF3B1-202ENST00000409915 NEXNQ0ZGT2 675 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 USP4Q13107 963 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 PTPRNQ16849 979 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 CRY2Q49AN0 593 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 L1TD1Q5T7N2 865 aaKnown RBP5.45□□□□□ -1.54
SF3B1-202ENST00000409915 UBE3BQ7Z3V4 1068 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 ATCAYQ86WG3 371 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 KIAA0825Q8IV33 1275 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 TTLL6Q8N841 843 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 RPGRQ92834 1020 aaKnown RBP5.45□□□□□ -1.54
SF3B1-202ENST00000409915 CEP63Q96MT8 703 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 ZNF830Q96NB3 372 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-202ENST00000409915 PAGR1Q9BTK6 254 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 UNC93B1Q9H1C4 597 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 CASS4Q9NQ75 786 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 ZNF358Q9NW07 568 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 CWC25Q9NXE8 425 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-202ENST00000409915 TNNQ9UQP3 1299 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 RIC1Q4ADV7 1423 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 ABCC4O15439 1325 aa5.45□□□□□ -1.54
SF3B1-202ENST00000409915 LAMB2P55268 1798 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 SLX4Q8IY92 1834 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 KLRG2A4D1S0 409 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 EIF1AYO14602 144 aaKnown RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 BCAR3O75815 825 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 SCGB1D2O95969 90 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 PCCAP05165 728 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 CDC27P30260 824 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 ST13P50502 369 aaKnown RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 SH3BP2P78314 561 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 TRIM28Q13263 835 aaKnown RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 MYBPC2Q14324 1141 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 GCKRQ14397 625 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 NFKBIBQ15653 356 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 ALDH1L2Q3SY69 923 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 COX20Q5RI15 118 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 BEND3Q5T5X7 828 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 C10orf62Q5T681 223 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 STYK1Q6J9G0 422 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 ARHGAP27Q6ZUM4 889 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 C14orf80Q86SX3 495 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 ZBTB33Q86T24 672 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 ZBTB38Q8NAP3 1195 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 CCDC191Q8NCU4 936 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 ARMC2Q8NEN0 867 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 BAP1Q92560 729 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 HPS1Q92902 700 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 ANAPC16Q96DE5 110 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 MASTLQ96GX5 879 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 NLRP3Q96P20 1036 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 INO80BQ9C086 356 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 CCDC113Q9H0I3 377 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.44□□□□□ -1.548e-7■■■■■ 27.9
SF3B1-202ENST00000409915 GINM1Q9NU53 330 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 EVA1BQ9NVM1 165 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 KBTBD4Q9NVX7 518 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 PRKAG3Q9UGI9 489 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 NRBP1Q9UHY1 535 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 NOB1Q9ULX3 412 aaKnown RBP5.44□□□□□ -1.54
SF3B1-202ENST00000409915 MSRB2Q9Y3D2 182 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 TLL2Q9Y6L7 1015 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 SCINQ9Y6U3 715 aa5.44□□□□□ -1.54
SF3B1-202ENST00000409915 RNF123Q5XPI4 1314 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms