RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 A0A1B0GTH6 734 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 ZNF185O15231 689 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 RAD21O60216 631 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 PIP4K2BP78356 416 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 KCNH5Q8NCM2 988 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 HELBQ8NG08 1087 aaPredicted RBP11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 PPM1EQ8WY54 764 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 PANX2Q96RD6 677 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 MMS19Q96T76 1030 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 GBP3Q9H0R5 595 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 PRDM1O75626 825 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 CABP4P57796 275 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 FUT2Q10981 343 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 IRF5Q13568 498 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 RRAGBQ5VZM2 374 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 FBXW10Q5XX13 1052 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 ARHGEF25Q86VW2 580 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 GLMNQ92990 594 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 NBPF3Q9H094 633 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 RAB21Q9UL25 225 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 CACNA1FO60840 1977 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 A0A087X0B3 334 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 SNAP23O00161 211 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 SH2B2O14492 632 aaPredicted RBP11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 DNA2P51530 1060 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 STIM1Q13586 685 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 ZNF174Q15697 407 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 CHRNA2Q15822 529 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 METTL24Q5JXM2 366 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 DHX37Q8IY37 1157 aaKnown RBP11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 MSANTD4Q8NCY6 345 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 HNRNPLLQ8WVV9 542 aaKnown RBP11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 JADE2Q9NQC1 790 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 ZSWIM5Q9P217 1185 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 FBXO2Q9UK22 296 aaPredicted RBP11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 WWC3Q9ULE0 1092 aa11.14□□□□□ -0.63
PTCHD4-202ENST00000398738 MACROD2A1Z1Q3 448 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 CORO7P57737 925 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 CCDC122Q5T0U0 273 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 SPATA1Q5VX52 437 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 TRIM22Q8IYM9 498 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 GNL3LQ9NVN8 582 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 ADD3Q9UEY8 706 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 ATP1A1P05023 1023 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 MYBL2P10244 700 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 PTPREP23469 700 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 UBXN1Q04323 297 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 VAC14Q08AM6 782 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 SWT1Q5T5J6 900 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 DMRTA1Q5VZB9 504 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 RASGRP2Q7LDG7 609 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 CNGA4Q8IV77 575 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 AIDAQ96BJ3 306 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 VPS54Q9P1Q0 977 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 MKRN1Q9UHC7 482 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 SYF2O95926 243 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 USP5P45974 858 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 CASP7P55210 303 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 DPYDQ12882 1025 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 KIAA1328Q86T90 577 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 PLBD2Q8NHP8 589 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 PLIN2Q99541 437 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 KAT14Q9H8E8 782 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 TTF2Q9UNY4 1162 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 TBX22Q9Y458 520 aa11.13□□□□□ -0.63
PTCHD4-202ENST00000398738 SPDYE5A6NIY4 337 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 PPFIA4O75335 1185 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 TATP17735 454 aaPredicted RBP11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 GPTP24298 496 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 PPARAQ07869 468 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 KRT31Q15323 416 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 ANKLE2Q86XL3 938 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 BCAS4Q8TDM0 211 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 NBPF26B4DH59 902 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 ACTN4O43707 911 aaKnown RBP11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 ZEB2O60315 1214 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 ERCC3P19447 782 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 NTRK3Q16288 839 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 NBPF14Q5TI25 921 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 NBPF10Q6P3W6 841 aaKnown RBP11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 NBPF15Q8N660 670 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 IQUBQ8NA54 791 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 RASSF8Q8NHQ8 419 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 GJD4Q96KN9 370 aaPredicted RBP11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 FAM107BQ9H098 131 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 NAPBQ9H115 298 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 ABHD10Q9NUJ1 306 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 DUSP10Q9Y6W6 482 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 ZNF532Q9HCE3 1301 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 ABCC6O95255 1503 aa11.12□□□□□ -0.63
PTCHD4-202ENST00000398738 GOLGA6CA6NDK9 693 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 H0YHG0 523 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 ERLIN2O94905 339 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 GOLGA6DP0CG33 693 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 MCAMP43121 646 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 SLC7A5Q01650 507 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 CYP27A1Q02318 531 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 C2orf54Q08AI8 447 aa11.11□□□□□ -0.63
PTCHD4-202ENST00000398738 RTN1Q16799 776 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms