RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 EPHB4P54760 987 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 E4F1Q66K89 784 aaPredicted RBP12.26□□□□□ -0.45
HPS4-202ENST00000398145 GSTA5Q7RTV2 222 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 RNF26Q9BY78 433 aaPredicted RBP12.26□□□□□ -0.45
HPS4-202ENST00000398145 PUS3Q9BZE2 481 aaKnown RBP12.26□□□□□ -0.45
HPS4-202ENST00000398145 NDUFA10O95299 355 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 ADORA1P30542 326 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 TRAF1Q13077 416 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 TAOK1Q7L7X3 1001 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 SYCE1Q8N0S2 351 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 RETREG2Q8NC44 543 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 GJB4Q9NTQ9 266 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 STIM2Q9P246 746 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 SPDYE3A6NKU9 549 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 TADA3O75528 432 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 MMP1P03956 469 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 PHKG2P15735 406 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 TNFAIP3P21580 790 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 GUCY2DQ02846 1103 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 NR5A1Q13285 461 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 TSGA10IPQ3SY00 556 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 TTC19Q6DKK2 380 aaPredicted RBP12.26□□□□□ -0.45
HPS4-202ENST00000398145 BLIDQ8IZY5 108 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 ATP10DQ9P241 1426 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 IQSEC2Q5JU85 1478 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 PRAMEF22A3QJZ6 481 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 TMEM232C9JQI7 657 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 MFAP3LO75121 409 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 LONP1P36776 959 aaKnown RBP12.25□□□□□ -0.45
HPS4-202ENST00000398145 TOGARAM2Q6ZUX3 1019 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 ZSCAN10Q96SZ4 725 aaPredicted RBP12.25□□□□□ -0.45
HPS4-202ENST00000398145 NAP1L4Q99733 375 aaKnown RBP12.25□□□□□ -0.45
HPS4-202ENST00000398145 SRPRBQ9Y5M8 271 aaKnown RBP12.25□□□□□ -0.45
HPS4-202ENST00000398145 KCNK3O14649 394 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 SPOPO43791 374 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 EPC1Q9H2F5 836 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 CROCC2H7BZ55 1655 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 EFCAB6Q5THR3 1501 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 BUB1O43683 1085 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 COBLO75128 1261 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 SCG2P13521 617 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 CYP2C19P33261 490 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 NCAPH2Q6IBW4 605 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 RAB17Q9H0T7 212 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 RESP18Q5W5W9 173 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 FNBP4Q8N3X1 1017 aaPredicted RBP12.25□□□□□ -0.45
HPS4-202ENST00000398145 PPP1R14CQ8TAE6 165 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 SETDB2Q96T68 719 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 NLRP1Q9C000 1473 aa12.25□□□□□ -0.45
HPS4-202ENST00000398145 USP17L12C9JPN9 530 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 USP17L21D6R901 530 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 SH2B2O14492 632 aaPredicted RBP12.24□□□□□ -0.45
HPS4-202ENST00000398145 PCK1P35558 622 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 PLCB3Q01970 1234 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 PARP10Q53GL7 1025 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 ICE2Q659A1 982 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 DNAJC10Q8IXB1 793 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 PLCB1Q9NQ66 1216 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 B4DLN1 442 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 TRAPPC10P48553 1259 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 MXRA7P84157 204 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 UBL4BQ8N7F7 174 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 PPFIBP2Q8ND30 876 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 ST7Q9NRC1 585 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 JAG2Q9Y219 1238 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 CEP83Q9Y592 693 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 ZFYVE16Q7Z3T8 1539 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 LTKP29376 864 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 SF3A3Q12874 501 aaKnown RBP eCLIP12.24□□□□□ -0.459e-7■■■■□ 22
HPS4-202ENST00000398145 CALCRLQ16602 461 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 MEX3CQ5U5Q3 659 aaKnown RBP12.24□□□□□ -0.45
HPS4-202ENST00000398145 DENND2CQ68D51 928 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 ARHGEF25Q86VW2 580 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 VSIG1Q86XK7 387 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 NELFCDQ8IXH7 590 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 LZTS2Q9BRK4 669 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 FRMD4BQ9Y2L6 1034 aa12.24□□□□□ -0.45
HPS4-202ENST00000398145 ANKRD65E5RJM6 399 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 EEF2P13639 858 aaKnown RBP12.23□□□□□ -0.45
HPS4-202ENST00000398145 LIFRP42702 1097 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 TFAP4Q01664 338 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 IFT88Q13099 833 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 E2F4Q16254 413 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 REXO1Q8N1G1 1221 aaKnown RBP12.23□□□□□ -0.45
HPS4-202ENST00000398145 ANKRD2Q9GZV1 360 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 PUS7LQ9H0K6 701 aaKnown RBP12.23□□□□□ -0.45
HPS4-202ENST00000398145 AATFQ9NY61 560 aaKnown RBP eCLIP12.23□□□□□ -0.45
HPS4-202ENST00000398145 KRIT1O00522 736 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 RGS16O15492 202 aaPredicted RBP12.23□□□□□ -0.45
HPS4-202ENST00000398145 PCCAP05165 728 aaPredicted RBP12.23□□□□□ -0.45
HPS4-202ENST00000398145 PTPREP23469 700 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 CTSWP56202 376 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 IRX5P78411 483 aaPredicted RBP12.23□□□□□ -0.45
HPS4-202ENST00000398145 HAUS3Q68CZ6 603 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 LMNTD2Q8IXW0 634 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 CCDC170Q8IYT3 715 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 CNOT6LQ96LI5 555 aaKnown RBP12.23□□□□□ -0.45
HPS4-202ENST00000398145 SMC6Q96SB8 1091 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 FAM184BQ9ULE4 1060 aa12.23□□□□□ -0.45
HPS4-202ENST00000398145 PCDHB6Q9Y5E3 794 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms