RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 NCOA2Q15596 1464 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 H7C0C1 242 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 ATP5OP48047 213 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 RNF10Q8N5U6 811 aaKnown RBP13.68□□□□□ -0.22
CHD3-203ENST00000380358 C7orf31Q8N865 590 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 PLEKHG3A1L390 1219 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 BCRP11274 1271 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 ATAD2BQ9ULI0 1458 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 CLRN2A0PK11 232 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 SLC9C1Q4G0N8 1177 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 KIAA0825Q8IV33 1275 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 LRGUKQ96M69 825 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 DPH5Q9H2P9 285 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 SYNJ2O15056 1496 aa13.68□□□□□ -0.22
CHD3-203ENST00000380358 YIPF2Q9BWQ6 316 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 TYW5A2RUC4 315 aaKnown RBP13.67□□□□□ -0.22
CHD3-203ENST00000380358 GSTA4O15217 222 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 PDE1AP54750 535 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 RAB20Q9NX57 234 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 TNNC2P02585 160 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 PIK3CAP42336 1068 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 SPICE1Q8N0Z3 855 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 SDCCAG3Q96C92 435 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 NAPGQ99747 312 aaPredicted RBP13.67□□□□□ -0.22
CHD3-203ENST00000380358 HPS4Q9NQG7 708 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 SLC5A4Q9NY91 659 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 KIF21BO75037 1637 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 PSMD2Q13200 908 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 SLF1Q9BQI6 1058 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 LRWD1Q9UFC0 647 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 NKTRP30414 1462 aaKnown RBP13.67□□□□□ -0.22
CHD3-203ENST00000380358 K7ENM7 598 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 C17orf53Q8N3J3 647 aaPredicted RBP13.67□□□□□ -0.22
CHD3-203ENST00000380358 CCNYQ8ND76 341 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 CUX1P39880 1505 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 FAM173BQ6P4H8 233 aa13.67□□□□□ -0.22
CHD3-203ENST00000380358 MMTAG2Q9BU76 263 aaKnown RBP13.67□□□□□ -0.22
CHD3-203ENST00000380358 ELP1O95163 1332 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 POC1B-GALNT4F8VUJ3 575 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 STX2P32856 288 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 TECP42680 631 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 DYNLT1P63172 113 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 OTUD6AQ7L8S5 288 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 GOLGA8HP0CJ92 632 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 POLGP54098 1239 aaPredicted RBP13.66□□□□□ -0.22
CHD3-203ENST00000380358 TRMT10CQ7L0Y3 403 aaKnown RBP13.66□□□□□ -0.22
CHD3-203ENST00000380358 C8orf58Q8NAV2 365 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 SECISBP2LQ93073 1101 aaKnown RBP13.66□□□□□ -0.22
CHD3-203ENST00000380358 ADPGKQ9BRR6 497 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 VPS54Q9P1Q0 977 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 TTF2Q9UNY4 1162 aaKnown RBP13.66□□□□□ -0.22
CHD3-203ENST00000380358 PLCD1P51178 756 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 NELFBQ8WX92 580 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 FTOQ9C0B1 505 aaKnown RBP eCLIP13.66□□□□□ -0.22
CHD3-203ENST00000380358 CCDC87Q9NVE4 849 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 SCHIP1Q9P0W5 487 aaPredicted RBP13.66□□□□□ -0.22
CHD3-203ENST00000380358 KSR2Q6VAB6 950 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 CABP7Q86V35 215 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 ARFGAP2Q8N6H7 521 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 CARD6Q9BX69 1037 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 POLA2Q14181 598 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 ZCWPW1Q9H0M4 648 aa13.66□□□□□ -0.22
CHD3-203ENST00000380358 ZNF277Q9NRM2 450 aaPredicted RBP13.66□□□□□ -0.22
CHD3-203ENST00000380358 SEPT9Q9UHD8 586 aaPredicted RBP13.66□□□□□ -0.22
CHD3-203ENST00000380358 EPRSP07814 1512 aaKnown RBP13.65□□□□□ -0.22
CHD3-203ENST00000380358 MARK3P27448 753 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 SOX5P35711 763 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 PAK1Q13153 545 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 PUM3Q15397 648 aaKnown RBP13.65□□□□□ -0.22
CHD3-203ENST00000380358 KRT27Q7Z3Y8 459 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 TSNAXIP1Q2TAA8 658 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 CYP26C1Q6V0L0 522 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 FAM149B1Q96BN6 582 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 PPWD1Q96BP3 646 aaKnown RBP13.65□□□□□ -0.22
CHD3-203ENST00000380358 NSUN2Q08J23 767 aaKnown RBP eCLIP13.65□□□□□ -0.22
CHD3-203ENST00000380358 SNX1Q13596 522 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 SMAD1Q15797 465 aaKnown RBP13.65□□□□□ -0.22
CHD3-203ENST00000380358 CPSF3Q9UKF6 684 aaKnown RBP13.65□□□□□ -0.22
CHD3-203ENST00000380358 SYF2O95926 243 aaKnown RBP13.65□□□□□ -0.22
CHD3-203ENST00000380358 ZNF18P17022 549 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 ATP1A2P50993 1020 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 TTC38Q5R3I4 469 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 IFT20Q8IY31 132 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 OTULINQ96BN8 352 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 PNMA2Q9UL42 364 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 FAM95CA0A1B0GW59 222 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 HEXIM1O94992 359 aaKnown RBP13.65□□□□□ -0.22
CHD3-203ENST00000380358 VWA3BQ502W6 1294 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 POLR3EQ9NVU0 708 aa13.65□□□□□ -0.22
CHD3-203ENST00000380358 F5H423 210 aaPredicted RBP13.65□□□□□ -0.23
CHD3-203ENST00000380358 TRPA1O75762 1119 aa13.65□□□□□ -0.23
CHD3-203ENST00000380358 UVSSAQ2YD98 709 aa13.65□□□□□ -0.23
CHD3-203ENST00000380358 RFX6Q8HWS3 928 aa13.65□□□□□ -0.23
CHD3-203ENST00000380358 PDCD6IPQ8WUM4 868 aaKnown RBP13.65□□□□□ -0.23
CHD3-203ENST00000380358 TLR3O15455 904 aaKnown RBP13.64□□□□□ -0.23
CHD3-203ENST00000380358 VCPP55072 806 aaKnown RBP13.64□□□□□ -0.23
CHD3-203ENST00000380358 KRT71Q3SY84 523 aa13.64□□□□□ -0.23
CHD3-203ENST00000380358 CCDC94Q9BW85 323 aaPredicted RBP13.64□□□□□ -0.23
CHD3-203ENST00000380358 VCX3AQ9NNX9 186 aa13.64□□□□□ -0.23
CHD3-203ENST00000380358 A6NJR5 290 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms