RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 ALG13Q9NP73 1137 aaKnown RBP4.62□□□□□ -1.67
MCF2-203ENST00000370576 ANO2Q9NQ90 1003 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 FAM198AQ9UFP1 575 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 IP6K2Q9UHH9 426 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 GTF2A1LQ9UNN4 478 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 LRRC37A2A6NM11 1700 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 GPR182O15218 404 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 KCNQ3O43525 872 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 PLIN1O60240 522 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 SNRPA1P09661 255 aaKnown RBP4.62□□□□□ -1.67
MCF2-203ENST00000370576 FKBP4Q02790 459 aaKnown RBP eCLIP4.62□□□□□ -1.67
MCF2-203ENST00000370576 DNAJC21Q5F1R6 531 aaKnown RBP4.62□□□□□ -1.67
MCF2-203ENST00000370576 THUMPD2Q9BTF0 503 aaKnown RBP4.62□□□□□ -1.67
MCF2-203ENST00000370576 ANTXR1Q9H6X2 564 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 LEMD3Q9Y2U8 911 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 CD2APQ9Y5K6 639 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 TTC41PQ6P2S7 1318 aa4.62□□□□□ -1.67
MCF2-203ENST00000370576 DYTNA2CJ06 578 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 NEURL1BA8MQ27 555 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 ATICP31939 592 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 EHHADHQ08426 723 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 OTOP3Q7RTS5 596 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 JPH3Q8WXH2 748 aaPredicted RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 SEC16BQ96JE7 1060 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 TBC1D32Q96NH3 1257 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 NCOA5Q9HCD5 579 aaKnown RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 KCNQ5Q9NR82 932 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 TMX2Q9Y320 296 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 SNCAIPQ9Y6H5 919 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 RPAP1Q9BWH6 1393 aaPredicted RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 MYH8P13535 1937 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 PRR29P0C7W0 189 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 GSPT1P15170 499 aaKnown RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 LSMEM1Q8N8F7 131 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 MARCH10Q8NA82 808 aaPredicted RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 PJA1Q8NG27 643 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 DDX17Q92841 729 aaKnown RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 CITED4Q96RK1 184 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.61□□□□□ -1.67
MCF2-203ENST00000370576 HERPUD2Q9BSE4 406 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 RWDD1Q9H446 243 aaPredicted RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 PLEKHA5Q9HAU0 1116 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 RBM19Q9Y4C8 960 aaKnown RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 SNX2O60749 519 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 IL6STP40189 918 aaPredicted RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 SEPT2Q15019 361 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 C2orf27AQ580R0 203 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 USPL1Q5W0Q7 1092 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 ZNF530Q6P9A1 599 aaPredicted RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 UBE2Q1Q7Z7E8 422 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 GJA10Q969M2 543 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 RSRC1Q96IZ7 334 aaKnown RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 YTHDC1Q96MU7 727 aaKnown RBP4.61□□□□□ -1.67
MCF2-203ENST00000370576 FBXO10Q9UK96 956 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 AK5Q9Y6K8 562 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 SLX4Q8IY92 1834 aa4.61□□□□□ -1.67
MCF2-203ENST00000370576 EYA2O00167 538 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 PGRP06401 933 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 LDHBP07195 334 aaKnown RBP4.6□□□□□ -1.67
MCF2-203ENST00000370576 MRE11P49959 708 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 PAK2Q13177 524 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 KRT24Q2M2I5 525 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 ANKRD39Q53RE8 183 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 CHD1LQ86WJ1 897 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 OR8H2Q8N162 312 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 PIGBQ92521 554 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 DNAJC7Q99615 494 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 XPO4Q9C0E2 1151 aaKnown RBP4.6□□□□□ -1.67
MCF2-203ENST00000370576 ZFYVE28Q9HCC9 887 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 TSPYL4Q9UJ04 414 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 DGKBQ9Y6T7 804 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 BTBD11A6QL63 1104 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 GNAI3P08754 354 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 EN1Q05925 392 aaPredicted RBP4.6□□□□□ -1.67
MCF2-203ENST00000370576 HOMER1Q86YM7 354 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 LRRN4Q8WUT4 740 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 SELENOOQ9BVL4 669 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 SLC13A1Q9BZW2 595 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 TCF7L1Q9HCS4 588 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 OSGEPQ9NPF4 335 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 SMC4Q9NTJ3 1288 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 SEPT3Q9UH03 358 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 PCDHGC3Q9UN70 934 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 FZD9O00144 591 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 TOR1BO14657 336 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 LMNB1P20700 586 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 FGFR2P21802 821 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 MZF1P28698 734 aaPredicted RBP4.6□□□□□ -1.67
MCF2-203ENST00000370576 CCT2P78371 535 aaKnown RBP4.6□□□□□ -1.67
MCF2-203ENST00000370576 GBX1Q14549 363 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 PROSER3Q2NL68 480 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 TTC22Q5TAA0 569 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 KCT2Q8NC54 265 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 LILRB1Q8NHL6 650 aaPredicted RBP4.6□□□□□ -1.67
MCF2-203ENST00000370576 OCSTAMPQ9BR26 566 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 SH3GLB2Q9NR46 395 aa4.6□□□□□ -1.67
MCF2-203ENST00000370576 COL1A1P02452 1464 aaPredicted RBP4.59□□□□□ -1.67
MCF2-203ENST00000370576 ZNF804BA4D1E1 1349 aa4.59□□□□□ -1.67
MCF2-203ENST00000370576 MAP3K15Q6ZN16 1313 aa4.59□□□□□ -1.67
MCF2-203ENST00000370576 A0A087WZG4 1122 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms