RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 HAPLN3Q96S86 360 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 GOLGA8BA8MQT2 603 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 URODP06132 367 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 DDX5P17844 614 aaKnown RBP4.57□□□□□ -1.68
USH2A-202ENST00000366942 CPT1AP50416 773 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 TAF11Q15544 211 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 Q3C1V9 767 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 SLAIN1Q8ND83 568 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 MMP19Q99542 508 aa4.57□□□□□ -1.68
USH2A-202ENST00000366942 NSD2O96028 1365 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 KDM5CP41229 1560 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 MROH5Q6ZUA9 1318 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 STXBP3O00186 592 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 LAD1O00515 517 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 CETN3O15182 167 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 CENPCQ03188 943 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ICA1Q05084 483 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 PUM3Q15397 648 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 CCDC40Q4G0X9 1142 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 DPH6Q7L8W6 267 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 NOP9Q86U38 636 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 ZNF557Q8N988 423 aaPredicted RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 IFT81Q8WYA0 676 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 KIFC2Q96AC6 838 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 CLRN2A0PK11 232 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 TMCO5BA8MYB1 307 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 IGSF3O75054 1194 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 FOSL2P15408 326 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ALDH7A1P49419 539 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 PLD1Q13393 1074 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 WTAPQ15007 396 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 GRIK4Q16099 956 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 PRAMEF18Q5VWM3 479 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 DSTYKQ6XUX3 929 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 FCHSD1Q86WN1 690 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 SPATA5Q8NB90 893 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 SLC7A3Q8WY07 619 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 COLEC11Q9BWP8 271 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ZSWIM6Q9HCJ5 1215 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 USP20Q9Y2K6 914 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.56□□□□□ -1.68
USH2A-202ENST00000366942 IKBKGQ9Y6K9 419 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 FAM169AQ9Y6X4 670 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ZC3H4Q9UPT8 1303 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 GCOM1H8Y6P7 765 aaPredicted RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 GOLIM4O00461 696 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 SYNCRIPO60506 623 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 POLR2MP0CAP2 368 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 NEDD9Q14511 834 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 SNX17Q15036 470 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 DOK7Q18PE1 504 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 TKFCQ3LXA3 575 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 USH1GQ495M9 461 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 CACNA2D4Q7Z3S7 1137 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 TMC7Q7Z402 723 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 RPAP2Q8IXW5 612 aaPredicted RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 XAGE3Q8WTP9 111 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ERCC4Q92889 916 aaPredicted RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 DACT1Q9NYF0 836 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ZNF536O15090 1300 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ARAP1Q96P48 1450 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 NPM3O75607 178 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 GNSP15586 552 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 MAP7Q14244 749 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 PUS10Q3MIT2 529 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 PDXDC1Q6P996 788 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 SSH2Q76I76 1423 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 USP26Q9BXU7 913 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ATP6V0A4Q9HBG4 840 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 IL16Q14005 1332 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 GSTTP1A0A1W2PQM5 241 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 MACROD2A1Z1Q3 448 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 GMNNO75496 209 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 CCDC192P0DO97 292 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 DAB2P98082 770 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ATAT1Q5SQI0 421 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 CATSPER4Q7RTX7 472 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ERO1BQ86YB8 467 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ZSCAN31Q96LW9 406 aaPredicted RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 EPC1Q9H2F5 836 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 BICC1Q9H694 974 aaKnown RBP4.56□□□□□ -1.68
USH2A-202ENST00000366942 PFDN4Q9NQP4 134 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ZHX2Q9Y6X8 837 aa4.56□□□□□ -1.68
USH2A-202ENST00000366942 ARHGEF11O15085 1522 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 TESPA1A2RU30 521 aaPredicted RBP4.55□□□□□ -1.68
USH2A-202ENST00000366942 SPDYE2BA6NHP3 402 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 CCDC169A6NNP5 214 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 M0QYT0 321 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 ATP2A1O14983 1001 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 GJB1P08034 283 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 SPDYE6P0CI01 402 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 SFPQP23246 707 aaKnown RBP eCLIP4.55□□□□□ -1.68
USH2A-202ENST00000366942 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.55□□□□□ -1.68
USH2A-202ENST00000366942 DNAJC10Q8IXB1 793 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 MYOCDQ8IZQ8 938 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 CCDC68Q9H2F9 335 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 DNAJC11Q9NVH1 559 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 ZBTB21Q9ULJ3 1066 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 JRKLQ9Y4A0 524 aa4.55□□□□□ -1.68
USH2A-202ENST00000366942 PCDHB6Q9Y5E3 794 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms