RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 CSRNP2Q9H175 543 aa12.65□□□□□ -0.39
SVIP-201ENST00000354193 CBX8Q9HC52 389 aa12.65□□□□□ -0.39
SVIP-201ENST00000354193 WDR19Q8NEZ3 1342 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 ILDR1Q86SU0 546 aaPredicted RBP12.64□□□□□ -0.39
SVIP-201ENST00000354193 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.64□□□□□ -0.39
SVIP-201ENST00000354193 USP17L10C9JJH3 530 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 GNA11P29992 359 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 PPP2R5BQ15173 497 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 RCSD1Q6JBY9 416 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 REXO1Q8N1G1 1221 aaKnown RBP12.64□□□□□ -0.39
SVIP-201ENST00000354193 NOC3LQ8WTT2 800 aaKnown RBP12.64□□□□□ -0.39
SVIP-201ENST00000354193 TMEM260Q9NX78 707 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 TCEAL9Q9UHQ7 104 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 C4BP0C0L5 1744 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 KRT18P05783 430 aaKnown RBP12.64□□□□□ -0.39
SVIP-201ENST00000354193 ERCC3P19447 782 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 EARS2Q5JPH6 523 aaKnown RBP12.64□□□□□ -0.39
SVIP-201ENST00000354193 MTMR4Q9NYA4 1195 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 ZNRF3Q9ULT6 936 aa12.64□□□□□ -0.39
SVIP-201ENST00000354193 CLSTN1O94985 981 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 RAD51AP2Q09MP3 1159 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 PLS1Q14651 629 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 DTHD1Q6ZMT9 781 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 C16orf86Q6ZW13 317 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 ZNF592Q92610 1267 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 SMARCE1Q969G3 411 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 TCP11L1Q9NUJ3 509 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 POLR3EQ9NVU0 708 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 PCDHA1Q9Y5I3 950 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 CTAGE5O15320 804 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 TRMT44Q8IYL2 757 aaKnown RBP12.63□□□□□ -0.39
SVIP-201ENST00000354193 TANGO6Q9C0B7 1094 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 CLEC11AQ9Y240 323 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 MYH3P11055 1940 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 YDJCA8MPS7 323 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 H7C1D1 291 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 FOXN1O15353 648 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 WWC2Q6AWC2 1192 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 ARID3AQ99856 593 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 COL4A1P02462 1669 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 FAM205AQ6ZU69 1335 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 STAT6P42226 847 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 RSBN1LQ6PCB5 846 aaPredicted RBP12.63□□□□□ -0.39
SVIP-201ENST00000354193 CDAN1Q8IWY9 1227 aa12.63□□□□□ -0.39
SVIP-201ENST00000354193 SPEF2Q9C093 1822 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 ELP1O95163 1332 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L15C9J2P7 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L13C9JLJ4 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L11C9JVI0 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L18D6R9N7 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L22D6RA61 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L17D6RBQ6 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L19D6RCP7 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L20D6RJB6 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 EVCP57679 992 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L24Q0WX57 530 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 LONRF3Q496Y0 759 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 USP17L6PQ6QN14 398 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 GPR162Q16538 588 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 HHIPL2Q6UWX4 724 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 C11orf57Q6ZUT1 292 aaPredicted RBP12.62□□□□□ -0.39
SVIP-201ENST00000354193 PCMTD1Q96MG8 357 aaPredicted RBP12.62□□□□□ -0.39
SVIP-201ENST00000354193 FOXP1Q9H334 677 aaPredicted RBP12.62□□□□□ -0.39
SVIP-201ENST00000354193 BAZ2AQ9UIF9 1905 aaKnown RBP12.62□□□□□ -0.39
SVIP-201ENST00000354193 TECP42680 631 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 NONOQ15233 471 aaKnown RBP eCLIP12.62□□□□□ -0.39
SVIP-201ENST00000354193 EAPPQ56P03 285 aaPredicted RBP12.62□□□□□ -0.39
SVIP-201ENST00000354193 ATL3Q6DD88 541 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 C17orf53Q8N3J3 647 aaPredicted RBP12.62□□□□□ -0.39
SVIP-201ENST00000354193 TMEM87AQ8NBN3 555 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 KANSL2Q9H9L4 492 aa12.62□□□□□ -0.39
SVIP-201ENST00000354193 PP2D1A8MPX8 630 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 CUTAO60888 179 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 HOXA13P31271 388 aaPredicted RBP12.61□□□□□ -0.39
SVIP-201ENST00000354193 ADCY7P51828 1080 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 RASA3Q14644 834 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 KARSQ15046 597 aaKnown RBP12.61□□□□□ -0.39
SVIP-201ENST00000354193 SMYD4Q8IYR2 804 aaPredicted RBP12.61□□□□□ -0.39
SVIP-201ENST00000354193 SYMPKQ92797 1274 aaKnown RBP12.61□□□□□ -0.39
SVIP-201ENST00000354193 GJA10Q969M2 543 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 MTFR1LQ9H019 292 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 DHX36Q9H2U1 1008 aaKnown RBP12.61□□□□□ -0.39
SVIP-201ENST00000354193 F5H6K3 240 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 KLRC3Q07444 240 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 DPCR1Q3MIW9 517 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 MICALL2Q8IY33 904 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 ARHGEF10LQ9HCE6 1279 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 MYO5AQ9Y4I1 1855 aaKnown RBP12.61□□□□□ -0.39
SVIP-201ENST00000354193 CNTNAP5Q8WYK1 1306 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 SALL1Q9NSC2 1324 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 PAPPAQ13219 1627 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 ECE1P42892 770 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 SP4Q02446 784 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 PFKFB3Q16875 520 aaPredicted RBP12.61□□□□□ -0.39
SVIP-201ENST00000354193 TBCKQ8TEA7 893 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 SLC16A10Q8TF71 515 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 SPDYE3A6NKU9 549 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 CPLX3Q8WVH0 158 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 PSTPIP2Q9H939 334 aa12.61□□□□□ -0.39
SVIP-201ENST00000354193 PCDHA5Q9Y5H7 936 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms