RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 SLC35G1Q2M3R5 365 aa24.41■■□□□ 1.5
LIME1-210ENST00000621325 C16orf86Q6ZW13 317 aa24.41■■□□□ 1.5
LIME1-210ENST00000621325 TMEM47Q9BQJ4 181 aa24.41■■□□□ 1.5
LIME1-210ENST00000621325 TCP11L1Q9NUJ3 509 aa24.41■■□□□ 1.5
LIME1-210ENST00000621325 SNED1Q8TER0 1413 aa24.41■■□□□ 1.5
LIME1-210ENST00000621325 COL11A2P13942 1736 aaPredicted RBP24.41■■□□□ 1.5
LIME1-210ENST00000621325 ZRSR1Q15695 479 aaKnown RBP24.41■■□□□ 1.5
LIME1-210ENST00000621325 METTL16Q86W50 562 aaKnown RBP24.41■■□□□ 1.5
LIME1-210ENST00000621325 SLF2Q8IX21 1173 aa24.41■■□□□ 1.5
LIME1-210ENST00000621325 NRBP1Q9UHY1 535 aa24.41■■□□□ 1.5
LIME1-210ENST00000621325 GOLGB1Q14789 3259 aaKnown RBP24.41■■□□□ 1.5
LIME1-210ENST00000621325 TRIM75PA6NK02 468 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 FOXN1O15353 648 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 ALDH1B1P30837 517 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 USP49Q70CQ1 688 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 C17orf53Q8N3J3 647 aaPredicted RBP24.4■■□□□ 1.5
LIME1-210ENST00000621325 EYA3Q99504 573 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 MAD2L2Q9UI95 211 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 GRM4Q14833 912 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 KRBA2Q6ZNG9 492 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 ZNF622Q969S3 477 aaKnown RBP eCLIP24.4■■□□□ 1.5
LIME1-210ENST00000621325 MASTLQ96GX5 879 aa24.4■■□□□ 1.5
LIME1-210ENST00000621325 SRPRBQ9Y5M8 271 aaKnown RBP24.4■■□□□ 1.5
LIME1-210ENST00000621325 DDX60LQ5H9U9 1706 aaKnown RBP24.39■■□□□ 1.5
LIME1-210ENST00000621325 PTGS1P23219 599 aa24.39■■□□□ 1.5
LIME1-210ENST00000621325 NLRP12P59046 1061 aa24.39■■□□□ 1.5
LIME1-210ENST00000621325 PICALMQ13492 652 aa24.39■■□□□ 1.5
LIME1-210ENST00000621325 FLAD1Q8NFF5 587 aa24.39■■□□□ 1.5
LIME1-210ENST00000621325 GPKOWQ92917 476 aaPredicted RBP eCLIP24.39■■□□□ 1.5
LIME1-210ENST00000621325 NAT10Q9H0A0 1025 aaKnown RBP24.39■■□□□ 1.5
LIME1-210ENST00000621325 OFD1O75665 1012 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 NLRP5P59047 1200 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 KIAA2012Q0VF49 1180 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 FOXP4Q8IVH2 680 aaPredicted RBP24.39■■□□□ 1.49
LIME1-210ENST00000621325 DRC7Q8IY82 874 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 CNNM3Q8NE01 707 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 CSRNP2Q9H175 543 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 BRMS1Q9HCU9 246 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 TUBE1Q9UJT0 475 aa24.39■■□□□ 1.49
LIME1-210ENST00000621325 RXRBP28702 533 aa24.38■■□□□ 1.49
LIME1-210ENST00000621325 TTF2Q9UNY4 1162 aaKnown RBP24.38■■□□□ 1.49
LIME1-210ENST00000621325 CEP131Q9UPN4 1083 aa24.38■■□□□ 1.49
LIME1-210ENST00000621325 GOLGA8HP0CJ92 632 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 NT5C2P49902 561 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 SCNN1DP51172 638 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 ZNF174Q15697 407 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 SARM1Q6SZW1 724 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 CYTH3O43739 400 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 CCDC186Q7Z3E2 898 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 KCNQ5Q9NR82 932 aa24.37■■□□□ 1.49
LIME1-210ENST00000621325 POLR2DO15514 142 aaKnown RBP24.36■■□□□ 1.49
LIME1-210ENST00000621325 CCDC178Q5BJE1 867 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 TYW1BQ6NUM6 668 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 PIK3AP1Q6ZUJ8 805 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 CPVLQ9H3G5 476 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 ZNF287Q9HBT7 754 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 MYH1P12882 1939 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 GOLGA6L6A8MZA4 724 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 PDILTQ8N807 584 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 ZNF579Q8NAF0 562 aaKnown RBP24.36■■□□□ 1.49
LIME1-210ENST00000621325 NEDD1Q8NHV4 660 aa24.36■■□□□ 1.49
LIME1-210ENST00000621325 DDX4Q9NQI0 724 aaKnown RBP24.36■■□□□ 1.49
LIME1-210ENST00000621325 DBNDD1Q9H9R9 158 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 PYCARDQ9ULZ3 195 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 TTC38Q5R3I4 469 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 C2CD5Q86YS7 1000 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 CEP95Q96GE4 821 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 MAP7D2Q96T17 732 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 ZNF219Q9P2Y4 722 aaPredicted RBP24.35■■□□□ 1.49
LIME1-210ENST00000621325 CLIP2Q9UDT6 1046 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 SERTAD1Q9UHV2 236 aa24.35■■□□□ 1.49
LIME1-210ENST00000621325 MDM2Q00987 491 aaPredicted RBP24.34■■□□□ 1.49
LIME1-210ENST00000621325 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.34■■□□□ 1.49
LIME1-210ENST00000621325 PCDHA5Q9Y5H7 936 aa24.34■■□□□ 1.49
LIME1-210ENST00000621325 PALM3A6NDB9 673 aaPredicted RBP24.34■■□□□ 1.49
LIME1-210ENST00000621325 BPIFA3Q9BQP9 254 aa24.34■■□□□ 1.49
LIME1-210ENST00000621325 CCDC144BQ3MJ40 725 aa24.33■■□□□ 1.49
LIME1-210ENST00000621325 GRAMD1CQ8IYS0 662 aa24.33■■□□□ 1.49
LIME1-210ENST00000621325 EPSTI1Q96J88 318 aa24.33■■□□□ 1.49
LIME1-210ENST00000621325 SUGT1Q9Y2Z0 365 aa24.33■■□□□ 1.49
LIME1-210ENST00000621325 G3V3G9 751 aa24.33■■□□□ 1.48
LIME1-210ENST00000621325 PRR29P0C7W0 189 aa24.33■■□□□ 1.48
LIME1-210ENST00000621325 NCAPHQ15003 741 aa24.33■■□□□ 1.48
LIME1-210ENST00000621325 DCAF8Q5TAQ9 597 aa24.33■■□□□ 1.48
LIME1-210ENST00000621325 RASGRP4Q8TDF6 673 aa24.33■■□□□ 1.48
LIME1-210ENST00000621325 TMX4Q9H1E5 349 aaPredicted RBP24.33■■□□□ 1.48
LIME1-210ENST00000621325 GNAQP50148 359 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 LRMPQ12912 555 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 USP40Q9NVE5 1235 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 ADAMTSL1Q8N6G6 1762 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 A0A087X0B3 334 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 TPM3P06753 285 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 CHRNA5P30532 468 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 WWC2Q6AWC2 1192 aa24.32■■□□□ 1.48
LIME1-210ENST00000621325 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.32■■□□□ 1.48
LIME1-210ENST00000621325 KLRF2D3W0D1 207 aa24.31■■□□□ 1.48
LIME1-210ENST00000621325 BMP6P22004 513 aa24.31■■□□□ 1.48
LIME1-210ENST00000621325 CDC25BP30305 580 aa24.31■■□□□ 1.48
LIME1-210ENST00000621325 PTGDRQ13258 359 aa24.31■■□□□ 1.48
LIME1-210ENST00000621325 USP17L2Q6R6M4 530 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms