RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ZPR1O75312 459 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 CALML3P27482 149 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 EVCP57679 992 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 ZNF174Q15697 407 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 KMT5BQ4FZB7 885 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 SPECC1LQ69YQ0 1117 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 MCTP2Q6DN12 878 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 CARD6Q9BX69 1037 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 SLAIN2Q9P270 581 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 SERTAD1Q9UHV2 236 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 VWA3AA6NCI4 1184 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 STAT6P42226 847 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 IQCB1Q15051 598 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 IQCEQ6IPM2 695 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 FBXO38Q6PIJ6 1188 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 GOLGA1Q92805 767 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 ACSBG1Q96GR2 724 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 SH3GL3Q99963 347 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIG1-220ENST00000601091 DLG5Q8TDM6 1919 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 ST3GAL1Q11201 340 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 FKBP15Q5T1M5 1219 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 CC2D1AQ6P1N0 951 aaPredicted RBP11.68□□□□□ -0.54
LIG1-220ENST00000601091 TMEM110Q86TL2 294 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 ZNF654Q8IZM8 581 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 IGSF22Q8N9C0 903 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 FANCBQ8NB91 859 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 MORC4Q8TE76 937 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 ANKIB1Q9P2G1 1089 aa11.68□□□□□ -0.54
LIG1-220ENST00000601091 SEC63Q9UGP8 760 aaKnown RBP11.68□□□□□ -0.54
LIG1-220ENST00000601091 C3P01024 1663 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 GNAQP50148 359 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 SPA17Q15506 151 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 NLRP10Q86W26 655 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 CNGA4Q8IV77 575 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 AIFM3Q96NN9 605 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 TANGO6Q9C0B7 1094 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 BMP2KQ9NSY1 1161 aaPredicted RBP11.67□□□□□ -0.54
LIG1-220ENST00000601091 MON2Q7Z3U7 1717 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 RIMBP3CA6NJZ7 1639 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 RIMBP3BA6NNM3 1639 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 RIMBP3Q9UFD9 1639 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 SH2B2O14492 632 aaPredicted RBP11.67□□□□□ -0.54
LIG1-220ENST00000601091 DDB1Q16531 1140 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIG1-220ENST00000601091 NEK11Q8NG66 645 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 TTLL11Q8NHH1 800 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 C17orf50Q8WW18 174 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIG1-220ENST00000601091 LUC7LQ9NQ29 371 aaKnown RBP11.67□□□□□ -0.54
LIG1-220ENST00000601091 PEX19P40855 299 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 RWDD2BP57060 319 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 MB21D2Q8IYB1 491 aaPredicted RBP11.67□□□□□ -0.54
LIG1-220ENST00000601091 TRMT44Q8IYL2 757 aaKnown RBP11.67□□□□□ -0.54
LIG1-220ENST00000601091 TXLNBQ8N3L3 684 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 CEP112Q8N8E3 955 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 TRIM47Q96LD4 638 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 STX8Q9UNK0 236 aa11.67□□□□□ -0.54
LIG1-220ENST00000601091 CTAGE9A4FU28 777 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 PRDM1O75626 825 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 BAG3O95817 575 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 TPP2P29144 1249 aaPredicted RBP11.66□□□□□ -0.54
LIG1-220ENST00000601091 MCM7P33993 719 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 GCKP35557 465 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 MCAMP43121 646 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 MTIF2P46199 727 aaKnown RBP11.66□□□□□ -0.54
LIG1-220ENST00000601091 PPP1R13BQ96KQ4 1090 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 NLRP3Q96P20 1036 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 VEZTQ9HBM0 779 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 ZCCHC17Q9NP64 241 aaKnown RBP11.66□□□□□ -0.54
LIG1-220ENST00000601091 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.66□□□□□ -0.54
LIG1-220ENST00000601091 SPATA31A3Q5VYP0 1347 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 OVOS2A0A0G2JMS6 1433 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 LDHCP07864 332 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 TUBB4BP68371 445 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 AMPD3Q01432 767 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 SWT1Q5T5J6 900 aaKnown RBP11.66□□□□□ -0.54
LIG1-220ENST00000601091 CMTR1Q8N1G2 835 aaKnown RBP11.66□□□□□ -0.54
LIG1-220ENST00000601091 TBC1D22AQ8WUA7 517 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 FERMT2Q96AC1 680 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 ISCA1Q9BUE6 129 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 ZSWIM5Q9P217 1185 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 DENND2AQ9ULE3 1009 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 PSMA7O14818 248 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 MCM3P25205 808 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 LIFRP42702 1097 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 RANBP1P43487 201 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 CDR1P51861 262 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 SLC4A8Q2Y0W8 1093 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 ZNF569Q5MCW4 686 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 TRIM42Q8IWZ5 723 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 YIPF2Q9BWQ6 316 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 ARHGEF10LQ9HCE6 1279 aa11.66□□□□□ -0.54
LIG1-220ENST00000601091 CTAGE15A4D2H0 777 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 CTAGE8P0CG41 777 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 MYBL2P10244 700 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 IFNAR1P17181 557 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 PPP2R3AQ06190 1150 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 PPARAQ07869 468 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 TRIM28Q13263 835 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms