RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TAF1CQ15572 869 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-207ENST00000597136 PROCA1Q8NCQ7 364 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-207ENST00000597136 KIF2CQ99661 725 aa17.69■□□□□ 0.42
TRIM28-207ENST00000597136 AGTPBP1Q9UPW5 1226 aa17.69■□□□□ 0.42
TRIM28-207ENST00000597136 PLIN4Q96Q06 1357 aa17.69■□□□□ 0.42
TRIM28-207ENST00000597136 CA12O43570 354 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 KDM4AO75164 1064 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 ALDH1A1P00352 501 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 LBX1P52954 281 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 COL9A3Q14050 684 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-207ENST00000597136 ZKSCAN3Q9BRR0 538 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 RNF41Q9H4P4 317 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-207ENST00000597136 ARHGEF10LQ9HCE6 1279 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 SAGE1Q9NXZ1 904 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 TMOD4Q9NZQ9 345 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 NYAP2Q9P242 653 aa17.68■□□□□ 0.42
TRIM28-207ENST00000597136 E7EWF7 191 aa17.67■□□□□ 0.42
TRIM28-207ENST00000597136 SPICE1Q8N0Z3 855 aa17.67■□□□□ 0.42
TRIM28-207ENST00000597136 ZSWIM5Q9P217 1185 aa17.67■□□□□ 0.42
TRIM28-207ENST00000597136 ADCK5Q3MIX3 580 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 CYB5R4Q7L1T6 521 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 MKL1Q969V6 931 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 CHMP4CQ96CF2 233 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 C12orf42Q96LP6 360 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 CFHR5Q9BXR6 569 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 TTLL1O95922 423 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 PCP11498 1178 aaKnown RBP17.66■□□□□ 0.42
TRIM28-207ENST00000597136 VCAM1P19320 739 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 CTCFP49711 727 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-207ENST00000597136 USP14P54578 494 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 KRT32Q14532 448 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 LRRC47Q8N1G4 583 aaKnown RBP17.66■□□□□ 0.42
TRIM28-207ENST00000597136 ESR2Q92731 530 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 ASCC2Q9H1I8 757 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-207ENST00000597136 VCPKMTQ9H867 229 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 STX8Q9UNK0 236 aa17.66■□□□□ 0.42
TRIM28-207ENST00000597136 RAD21O60216 631 aa17.65■□□□□ 0.42
TRIM28-207ENST00000597136 HOXA7P31268 230 aaPredicted RBP17.65■□□□□ 0.42
TRIM28-207ENST00000597136 RCSD1Q6JBY9 416 aa17.65■□□□□ 0.42
TRIM28-207ENST00000597136 P2RX7Q99572 595 aaKnown RBP17.65■□□□□ 0.42
TRIM28-207ENST00000597136 ZFYVE28Q9HCC9 887 aa17.65■□□□□ 0.42
TRIM28-207ENST00000597136 ZCCHC17Q9NP64 241 aaKnown RBP17.65■□□□□ 0.42
TRIM28-207ENST00000597136 GPR25O00155 361 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 PEX10O60683 326 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 NOVP48745 357 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 POTEEQ6S8J3 1075 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 CHST3Q7LGC8 479 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 JAKMIP1Q96N16 626 aaKnown RBP17.64■□□□□ 0.41
TRIM28-207ENST00000597136 NUP88Q99567 741 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-207ENST00000597136 KRT23Q9C075 422 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 RPAP3Q9H6T3 665 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-207ENST00000597136 TCP11L1Q9NUJ3 509 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 CPA4Q9UI42 421 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 SLC45A1Q9Y2W3 748 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 ADGRA2Q96PE1 1338 aa17.64■□□□□ 0.41
TRIM28-207ENST00000597136 F5H6K3 240 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 TLR2O60603 784 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 CAP1Q01518 475 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 KLRC3Q07444 240 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 CATSPERGQ6ZRH7 1159 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 RASGRP2Q7LDG7 609 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 TM6SF1Q9BZW5 370 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 SH2D4AQ9H788 454 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 CNNM2Q9H8M5 875 aa17.63■□□□□ 0.41
TRIM28-207ENST00000597136 ECM2O94769 699 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-207ENST00000597136 PSMA5P28066 241 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 C17orf99Q6UX52 265 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 ZNF296Q8WUU4 475 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-207ENST00000597136 NEK1Q96PY6 1258 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 TMEM47Q9BQJ4 181 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L15C9J2P7 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L13C9JLJ4 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L11C9JVI0 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L18D6R9N7 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L22D6RA61 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L17D6RBQ6 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L19D6RCP7 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L20D6RJB6 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 NDUFB10O96000 172 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 CASTP20810 708 aaKnown RBP17.62■□□□□ 0.41
TRIM28-207ENST00000597136 USP17L24Q0WX57 530 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 RABEP1Q15276 862 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 FAM83BQ5T0W9 1011 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 NCOA7Q8NI08 942 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 ZSWIM6Q9HCJ5 1215 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 GOPCQ9HD26 462 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 MTMR7Q9Y216 660 aa17.62■□□□□ 0.41
TRIM28-207ENST00000597136 PLXNB2O15031 1838 aa17.61■□□□□ 0.41
TRIM28-207ENST00000597136 A0A0G2JMZ2 1700 aa17.61■□□□□ 0.41
TRIM28-207ENST00000597136 CENPFP49454 3210 aa17.61■□□□□ 0.41
TRIM28-207ENST00000597136 OSBPP22059 807 aa17.61■□□□□ 0.41
TRIM28-207ENST00000597136 ANTXR2P58335 489 aa17.61■□□□□ 0.41
TRIM28-207ENST00000597136 IRX3P78415 501 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-207ENST00000597136 TRDNQ13061 729 aa17.61■□□□□ 0.41
TRIM28-207ENST00000597136 PABPC4Q13310 644 aaKnown RBP eCLIP17.61■□□□□ 0.419e-9■■■■□ 20
TRIM28-207ENST00000597136 MB21D2Q8IYB1 491 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-207ENST00000597136 ENAHQ8N8S7 591 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-207ENST00000597136 ZSCAN10Q96SZ4 725 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-207ENST00000597136 PARK7Q99497 189 aaKnown RBP17.61■□□□□ 0.41
TRIM28-207ENST00000597136 UPF3BQ9BZI7 483 aaKnown RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms