RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TANGO6Q9C0B7 1094 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 MCOLN1Q9GZU1 580 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 VCPKMTQ9H867 229 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 EFCC1Q9HA90 598 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 NYAP2Q9P242 653 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 SYNPO2Q9UMS6 1093 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.39■□□□□ 0.05
CLK3-224ENST00000568605 TRIM17Q9Y577 477 aa15.39■□□□□ 0.05
CLK3-224ENST00000568605 ORC4O43929 436 aa15.38■□□□□ 0.05
CLK3-224ENST00000568605 RANBP6O60518 1105 aaKnown RBP15.38■□□□□ 0.05
CLK3-224ENST00000568605 TTLL1O95922 423 aa15.38■□□□□ 0.05
CLK3-224ENST00000568605 HAND2P61296 217 aa15.38■□□□□ 0.05
CLK3-224ENST00000568605 MFSD6Q6ZSS7 791 aa15.38■□□□□ 0.05
CLK3-224ENST00000568605 NEDD1Q8NHV4 660 aa15.38■□□□□ 0.05
CLK3-224ENST00000568605 RPAP3Q9H6T3 665 aaPredicted RBP15.38■□□□□ 0.05
CLK3-224ENST00000568605 A0A1W2PRG0 241 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 SGSM2O43147 1006 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 RAD21O60216 631 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 FCGRTP55899 365 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 HERVK_113P62684 666 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 TFAP4Q01664 338 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 RRP12Q5JTH9 1297 aaKnown RBP15.37■□□□□ 0.05
CLK3-224ENST00000568605 AKNAD1Q5T1N1 836 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 FBXO46Q6PJ61 603 aaPredicted RBP15.37■□□□□ 0.05
CLK3-224ENST00000568605 KIAA1211Q6ZU35 1233 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 OTOP1Q7RTM1 612 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 ANKRD13CQ8N6S4 541 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 STAG1Q8WVM7 1258 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 CEP95Q96GE4 821 aa15.37■□□□□ 0.05
CLK3-224ENST00000568605 IGKV6D-41A0A0C4DH26 115 aa15.36■□□□□ 0.05
CLK3-224ENST00000568605 FGRP09769 529 aa15.36■□□□□ 0.05
CLK3-224ENST00000568605 HOXD10P28358 340 aa15.36■□□□□ 0.05
CLK3-224ENST00000568605 PRMT2P55345 433 aa15.36■□□□□ 0.05
CLK3-224ENST00000568605 FAM47AQ5JRC9 791 aa15.36■□□□□ 0.05
CLK3-224ENST00000568605 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.36■□□□□ 0.05
CLK3-224ENST00000568605 MTMR4Q9NYA4 1195 aa15.36■□□□□ 0.05
CLK3-224ENST00000568605 MYPNQ86TC9 1320 aa15.36■□□□□ 0.05
CLK3-224ENST00000568605 CDC45O75419 566 aa15.35■□□□□ 0.05
CLK3-224ENST00000568605 FMNL1O95466 1100 aaPredicted RBP15.35■□□□□ 0.05
CLK3-224ENST00000568605 PSMC4P43686 418 aa15.35■□□□□ 0.05
CLK3-224ENST00000568605 CATSPERGQ6ZRH7 1159 aa15.35■□□□□ 0.05
CLK3-224ENST00000568605 ESR2Q92731 530 aa15.35■□□□□ 0.05
CLK3-224ENST00000568605 CNNM2Q9H8M5 875 aa15.35■□□□□ 0.05
CLK3-224ENST00000568605 MORF4L1Q9UBU8 362 aa15.35■□□□□ 0.05
CLK3-224ENST00000568605 STX8Q9UNK0 236 aa15.35■□□□□ 0.05
CLK3-224ENST00000568605 U3KPZ7 1027 aaPredicted RBP15.35■□□□□ 0.05
CLK3-224ENST00000568605 TNPO2O14787 897 aaKnown RBP15.34■□□□□ 0.05
CLK3-224ENST00000568605 FLOT1O75955 427 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 CCNA1P78396 465 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 LBX2Q6XYB7 198 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 TBC1D10CQ8IV04 446 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 CCAR1Q8IX12 1150 aaKnown RBP15.34■□□□□ 0.05
CLK3-224ENST00000568605 SPICE1Q8N0Z3 855 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 ABHD8Q96I13 439 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 P2RX7Q99572 595 aaKnown RBP15.34■□□□□ 0.05
CLK3-224ENST00000568605 PAGR1Q9BTK6 254 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 KRT23Q9C075 422 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 IL25Q9H293 177 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 CLIP2Q9UDT6 1046 aa15.34■□□□□ 0.05
CLK3-224ENST00000568605 FRMPD3Q5JV73 1810 aa15.33■□□□□ 0.05
CLK3-224ENST00000568605 TRDNQ13061 729 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 COG2Q14746 738 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 CCDC178Q5BJE1 867 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 SKAP1Q86WV1 359 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 IQCA1Q86XH1 822 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 SIAH1Q8IUQ4 282 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 LRRC47Q8N1G4 583 aaKnown RBP15.33■□□□□ 0.04
CLK3-224ENST00000568605 MB21D1Q8N884 522 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 GMCL1P1Q8NEA9 526 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 GPRC5AQ8NFJ5 357 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 MKL1Q969V6 931 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 COA7Q96BR5 231 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 ESYT1Q9BSJ8 1104 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 CWC22Q9HCG8 908 aaKnown RBP15.33■□□□□ 0.04
CLK3-224ENST00000568605 HOXC10Q9NYD6 342 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 PTPN22Q9Y2R2 807 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 RABGAP1Q9Y3P9 1069 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 NEDD4P46934 1319 aa15.33■□□□□ 0.04
CLK3-224ENST00000568605 SPDYE16A6NNV3 312 aaPredicted RBP15.32■□□□□ 0.04
CLK3-224ENST00000568605 F5H6K3 240 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 NDUFB10O96000 172 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 ERVK-9P63128 1117 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 ERVK-24P63145 666 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 KLRC3Q07444 240 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 TRIM47Q96LD4 638 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 ARHGAP39Q9C0H5 1083 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 NBPF3Q9H094 633 aa15.32■□□□□ 0.04
CLK3-224ENST00000568605 MAPK4P31152 587 aa15.31■□□□□ 0.04
CLK3-224ENST00000568605 FAM83BQ5T0W9 1011 aa15.31■□□□□ 0.04
CLK3-224ENST00000568605 ANO2Q9NQ90 1003 aa15.31■□□□□ 0.04
CLK3-224ENST00000568605 TCP11L1Q9NUJ3 509 aa15.31■□□□□ 0.04
CLK3-224ENST00000568605 SRRDQ9UH36 339 aa15.31■□□□□ 0.04
CLK3-224ENST00000568605 ISY1Q9ULR0 285 aaKnown RBP15.31■□□□□ 0.04
CLK3-224ENST00000568605 HPS5Q9UPZ3 1129 aa15.31■□□□□ 0.04
CLK3-224ENST00000568605 ECM2O94769 699 aaPredicted RBP15.3■□□□□ 0.04
CLK3-224ENST00000568605 TOP1P11387 765 aaKnown RBP15.3■□□□□ 0.04
CLK3-224ENST00000568605 PTH1RQ03431 593 aa15.3■□□□□ 0.04
CLK3-224ENST00000568605 SLC9C1Q4G0N8 1177 aa15.3■□□□□ 0.04
CLK3-224ENST00000568605 KIAA1755Q5JYT7 1200 aa15.3■□□□□ 0.04
CLK3-224ENST00000568605 SLFN13Q68D06 897 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms