RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ZKSCAN4Q969J2 545 aaPredicted RBP15.05■□□□□ -0
CLK3-206ENST00000562078 CABS1Q96KC9 395 aa15.05■□□□□ -0
CLK3-206ENST00000562078 TFCP2L1Q9NZI6 479 aa15.05■□□□□ -0
CLK3-206ENST00000562078 POTEB2H3BUK9 544 aa15.04■□□□□ -0
CLK3-206ENST00000562078 SERPINC1P01008 464 aa15.04■□□□□ -0
CLK3-206ENST00000562078 TOP1P11387 765 aaKnown RBP15.04■□□□□ -0
CLK3-206ENST00000562078 ADD2P35612 726 aa15.04■□□□□ -0
CLK3-206ENST00000562078 EXOSC10Q01780 885 aaKnown RBP15.04■□□□□ -0
CLK3-206ENST00000562078 FMR1NBQ8N0W7 255 aaPredicted RBP15.04■□□□□ -0
CLK3-206ENST00000562078 BAG1Q99933 345 aaPredicted RBP15.04■□□□□ -0
CLK3-206ENST00000562078 KAT14Q9H8E8 782 aa15.04■□□□□ -0
CLK3-206ENST00000562078 MRPL44Q9H9J2 332 aaKnown RBP15.04■□□□□ -0
CLK3-206ENST00000562078 GOLGA6L9A6NEM1 432 aa15.04■□□□□ -0
CLK3-206ENST00000562078 FGAP02671 866 aa15.04■□□□□ -0
CLK3-206ENST00000562078 SLC5A1P13866 664 aa15.04■□□□□ -0
CLK3-206ENST00000562078 TTF1Q15361 905 aaPredicted RBP15.04■□□□□ -0
CLK3-206ENST00000562078 IMMTQ16891 758 aaKnown RBP15.04■□□□□ -0
CLK3-206ENST00000562078 TPTE2Q6XPS3 522 aa15.04■□□□□ -0
CLK3-206ENST00000562078 CALR3Q96L12 384 aaKnown RBP15.04■□□□□ -0
CLK3-206ENST00000562078 ACBD3Q9H3P7 528 aa15.04■□□□□ -0
CLK3-206ENST00000562078 VEZTQ9HBM0 779 aa15.04■□□□□ -0
CLK3-206ENST00000562078 MYH13Q9UKX3 1938 aa15.04■□□□□ -0
CLK3-206ENST00000562078 CARMIL3Q8ND23 1372 aa15.03■□□□□ -0
CLK3-206ENST00000562078 PPFIA3O75145 1194 aa15.03■□□□□ -0
CLK3-206ENST00000562078 UQCRFS1P1P0C7P4 283 aa15.03■□□□□ -0
CLK3-206ENST00000562078 ZNF827Q17R98 1081 aa15.03■□□□□ -0
CLK3-206ENST00000562078 POTEDQ86YR6 584 aa15.03■□□□□ -0
CLK3-206ENST00000562078 VSTM4Q8IW00 320 aa15.03■□□□□ -0
CLK3-206ENST00000562078 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.03■□□□□ -0
CLK3-206ENST00000562078 NDUFA8P51970 172 aa15.03■□□□□ -0
CLK3-206ENST00000562078 CCDC24Q8N4L8 307 aa15.03■□□□□ -0
CLK3-206ENST00000562078 PDILTQ8N807 584 aa15.03■□□□□ -0
CLK3-206ENST00000562078 TACO1Q9BSH4 297 aaKnown RBP15.03■□□□□ -0
CLK3-206ENST00000562078 LZTFL1Q9NQ48 299 aa15.03■□□□□ -0
CLK3-206ENST00000562078 WWC3Q9ULE0 1092 aa15.03■□□□□ -0
CLK3-206ENST00000562078 RTL9Q8NET4 1388 aa15.02■□□□□ -0
CLK3-206ENST00000562078 A0A0U1RQJ8 604 aa15.02■□□□□ -0
CLK3-206ENST00000562078 PFKFB2O60825 505 aa15.02■□□□□ -0
CLK3-206ENST00000562078 NF2P35240 595 aa15.02■□□□□ -0
CLK3-206ENST00000562078 IGHMBP2P38935 993 aaKnown RBP15.02■□□□□ -0
CLK3-206ENST00000562078 NFIXQ14938 502 aa15.02■□□□□ -0
CLK3-206ENST00000562078 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.02■□□□□ -0
CLK3-206ENST00000562078 CEP112Q8N8E3 955 aa15.02■□□□□ -0
CLK3-206ENST00000562078 ATRIPQ8WXE1 791 aa15.02■□□□□ -0
CLK3-206ENST00000562078 AGXT2Q9BYV1 514 aa15.02■□□□□ -0
CLK3-206ENST00000562078 ZNF532Q9HCE3 1301 aa15.02■□□□□ -0
CLK3-206ENST00000562078 H0YHG0 523 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 SHOX2O60902 331 aaPredicted RBP15.02□□□□□ -0.01
CLK3-206ENST00000562078 GYS1P13807 737 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 PDE6AP16499 860 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 IRAK1P51617 712 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 SARNPP82979 210 aaKnown RBP15.02□□□□□ -0.01
CLK3-206ENST00000562078 DDR1Q08345 913 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 RASGRF1Q13972 1273 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 CDC23Q9UJX2 597 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 SAMM50Q9Y512 469 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 NEDD4P46934 1319 aa15.02□□□□□ -0.01
CLK3-206ENST00000562078 KIF3CO14782 793 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 GCFC2P16383 781 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 RDXP35241 583 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 ADKP55263 362 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 CCT2P78371 535 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 MTF1Q14872 753 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 SPATA5Q8NB90 893 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 BCAS4Q8TDM0 211 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 MRPS27Q92552 414 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 NCOA5Q9HCD5 579 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 FANCLQ9NW38 375 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 PCDHA7Q9UN72 937 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 CALRP27797 417 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 FNTAP49354 379 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 TEX11Q8IYF3 940 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 NSUN7Q8NE18 718 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 NLRP3Q96P20 1036 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 GPHNQ9NQX3 736 aaPredicted RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 RBM28Q9NW13 759 aaKnown RBP15.01□□□□□ -0.01
CLK3-206ENST00000562078 SH3BP1Q9Y3L3 701 aa15.01□□□□□ -0.01
CLK3-206ENST00000562078 AARSP49588 968 aaKnown RBP eCLIP15□□□□□ -0.01
CLK3-206ENST00000562078 NLRP12P59046 1061 aa15□□□□□ -0.01
CLK3-206ENST00000562078 C3orf67Q6ZVT6 689 aa15□□□□□ -0.01
CLK3-206ENST00000562078 CNBD1Q8NA66 436 aa15□□□□□ -0.01
CLK3-206ENST00000562078 NOA1Q8NC60 698 aaKnown RBP15□□□□□ -0.01
CLK3-206ENST00000562078 AKT1S1Q96B36 256 aa15□□□□□ -0.01
CLK3-206ENST00000562078 ODF2LQ9ULJ1 636 aa15□□□□□ -0.01
CLK3-206ENST00000562078 FRMD3A2A2Y4 597 aa15□□□□□ -0.01
CLK3-206ENST00000562078 PTPDC1A2A3K4 754 aa15□□□□□ -0.01
CLK3-206ENST00000562078 CTDNEP1O95476 244 aa15□□□□□ -0.01
CLK3-206ENST00000562078 EN1Q05925 392 aaPredicted RBP15□□□□□ -0.01
CLK3-206ENST00000562078 UBE3CQ15386 1083 aa15□□□□□ -0.01
CLK3-206ENST00000562078 PREPLQ4J6C6 727 aaPredicted RBP15□□□□□ -0.01
CLK3-206ENST00000562078 HSP90AA4PQ58FG1 418 aa15□□□□□ -0.01
CLK3-206ENST00000562078 SLC10A5Q5PT55 438 aa15□□□□□ -0.01
CLK3-206ENST00000562078 GDAP1L1Q96MZ0 367 aa15□□□□□ -0.01
CLK3-206ENST00000562078 CDC5LQ99459 802 aaKnown RBP15□□□□□ -0.01
CLK3-206ENST00000562078 GBP3Q9H0R5 595 aa15□□□□□ -0.01
CLK3-206ENST00000562078 INTS13Q9NVM9 706 aa15□□□□□ -0.01
CLK3-206ENST00000562078 ECM29Q5VYK3 1845 aa14.99□□□□□ -0.01
CLK3-206ENST00000562078 TNRC6CQ9HCJ0 1690 aaKnown RBP14.99□□□□□ -0.01
CLK3-206ENST00000562078 TCRBV5S4A2TA0A5A2 114 aa14.99□□□□□ -0.01
CLK3-206ENST00000562078 ZNF213O14771 459 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms