RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LMAN1P49257 510 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 UBE4AQ14139 1066 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 NBPF9Q3BBW0 867 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 DPH6Q7L8W6 267 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 MAGEC3Q8TD91 643 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 RPGRQ92834 1020 aaKnown RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 PDRG1Q9NUG6 133 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 GNL3LQ9NVN8 582 aaKnown RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 GGA2Q9UJY4 613 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 LOC285556D6RIA3 1793 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 CCDC189A1A4V9 331 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 ANKRD18BA2A2Z9 1011 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 EYA2O00167 538 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 POLR3GO15318 223 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 LMNB1P20700 586 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 GPSM2P81274 684 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 RESTQ13127 1097 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 PLCB4Q15147 1175 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 BEND6Q5SZJ8 279 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 LARP1BQ659C4 914 aaKnown RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 TTLL5Q6EMB2 1281 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 NAA16Q6N069 864 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 ELOA2Q8IYF1 753 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 TBC1D16Q8TBP0 767 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 ZBED3Q96IU2 234 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 GMLQ99445 158 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 TMX4Q9H1E5 349 aaPredicted RBP5.98□□□□□ -1.45
USP28-213ENST00000544967 HMG20BQ9P0W2 317 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 PGAP2Q9UHJ9 254 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 SUFUQ9UMX1 484 aa5.98□□□□□ -1.45
USP28-213ENST00000544967 GOLIM4O00461 696 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 IRX1P78414 480 aaPredicted RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 FAM160A1Q05DH4 1040 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 PPP2R3AQ06190 1150 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 PDE4DQ08499 809 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 ST3GAL1Q11201 340 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 TSR1Q2NL82 804 aaKnown RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 ARMCX5Q6P1M9 558 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 GBP6Q6ZN66 633 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 FBXO33Q7Z6M2 555 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 AMOTL1Q8IY63 956 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 JMYQ8N9B5 988 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 ENGASEQ8NFI3 743 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 BICD2Q8TD16 824 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 MRIQ9BWK5 157 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 UPF3BQ9BZI7 483 aaKnown RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 SEC31BQ9NQW1 1179 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 L1RE1Q9UN81 338 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 ATAD5Q96QE3 1844 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 IL15P40933 162 aaPredicted RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 TDO2P48775 406 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 WDR93Q6P2C0 686 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 LMBR1LQ6UX01 489 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 BICDL1Q6ZP65 573 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 YTHDF3Q7Z739 585 aaKnown RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 TAX1BP1Q86VP1 789 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 ANKRD18AQ8IVF6 992 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 LARGE2Q8N3Y3 721 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 MTMR14Q8NCE2 650 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 PARD6BQ9BYG5 372 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 POLLQ9UGP5 575 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.97□□□□□ -1.45
USP28-213ENST00000544967 H3BQF6 201 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 IFIT5Q13325 482 aaKnown RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 KIF4BQ2VIQ3 1234 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 LRRC31Q6UY01 552 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 SRGAP1Q7Z6B7 1085 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 PRPF38AQ8NAV1 312 aaKnown RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 PI4K2BQ8TCG2 481 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 PGBD1Q96JS3 809 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 C9orf78Q9NZ63 289 aaPredicted RBP5.97□□□□□ -1.45
USP28-213ENST00000544967 NUB1Q9Y5A7 615 aa5.97□□□□□ -1.45
USP28-213ENST00000544967 PNMA6EA0A0J9YXQ4 647 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 ZEB2O60315 1214 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 STX10O60499 249 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 NR1I2O75469 434 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 PDE8BO95263 885 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 IARSP41252 1262 aaKnown RBP5.96□□□□□ -1.45
USP28-213ENST00000544967 MRPL12P52815 198 aaKnown RBP5.96□□□□□ -1.45
USP28-213ENST00000544967 ZNF280AP59817 542 aaPredicted RBP5.96□□□□□ -1.45
USP28-213ENST00000544967 NECTIN1Q15223 517 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 WDR78Q5VTH9 848 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 C11orf57Q6ZUT1 292 aaPredicted RBP5.96□□□□□ -1.45
USP28-213ENST00000544967 KIFC2Q96AC6 838 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 TAOK3Q9H2K8 898 aa5.96□□□□□ -1.45
USP28-213ENST00000544967 PPP4CP60510 307 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 CHRNDQ07001 517 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 DRP2Q13474 957 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 HSP90B2PQ58FF3 399 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 CCDC73Q6ZRK6 1079 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 XAGE2Q96GT9 111 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 ZNF396Q96N95 335 aaPredicted RBP5.96□□□□□ -1.46
USP28-213ENST00000544967 CARD6Q9BX69 1037 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 MYO1AQ9UBC5 1043 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 DOCK1Q14185 1865 aa5.96□□□□□ -1.46
USP28-213ENST00000544967 KLHL33A6NCF5 533 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 SASH1O94885 1247 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 ERLIN2O94905 339 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 FSBPO95073 299 aa5.95□□□□□ -1.46
USP28-213ENST00000544967 VIL1P09327 827 aaKnown RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms