RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 SUCOQ9UBS9 1254 aaKnown RBP6.95□□□□□ -1.3
CD44-215ENST00000525241 ST14Q9Y5Y6 855 aa6.95□□□□□ -1.3
CD44-215ENST00000525241 TMEM265A0A087WTH1 108 aa6.94□□□□□ -1.3
CD44-215ENST00000525241 FAM155AB1AL88 458 aaPredicted RBP6.94□□□□□ -1.3
CD44-215ENST00000525241 PRNPP04156 253 aa6.94□□□□□ -1.3
CD44-215ENST00000525241 PMS1P54277 932 aaKnown RBP6.94□□□□□ -1.3
CD44-215ENST00000525241 LRP8Q14114 963 aa6.94□□□□□ -1.3
CD44-215ENST00000525241 DTWD2Q8NBA8 298 aa6.94□□□□□ -1.3
CD44-215ENST00000525241 PIWIL2Q8TC59 973 aaKnown RBP6.94□□□□□ -1.3
CD44-215ENST00000525241 ZNF512BQ96KM6 892 aaPredicted RBP6.94□□□□□ -1.3
CD44-215ENST00000525241 DHRS1Q96LJ7 313 aa6.94□□□□□ -1.3
CD44-215ENST00000525241 PRKAG3Q9UGI9 489 aa6.94□□□□□ -1.3
CD44-215ENST00000525241 ZNF214Q9UL59 606 aaPredicted RBP6.94□□□□□ -1.3
CD44-215ENST00000525241 SNX11Q9Y5W9 270 aa6.94□□□□□ -1.3
CD44-215ENST00000525241 C9IYK1 514 aa6.93□□□□□ -1.3
CD44-215ENST00000525241 HYAL3O43820 417 aaPredicted RBP6.93□□□□□ -1.3
CD44-215ENST00000525241 CLCN7P51798 805 aa6.93□□□□□ -1.3
CD44-215ENST00000525241 CHMP4BP1P59074 171 aa6.93□□□□□ -1.3
CD44-215ENST00000525241 RNF4P78317 190 aa6.93□□□□□ -1.3
CD44-215ENST00000525241 PPP2R5EQ16537 467 aa6.93□□□□□ -1.3
CD44-215ENST00000525241 PPFIBP1Q86W92 1011 aa6.93□□□□□ -1.3
CD44-215ENST00000525241 SLC12A7Q9Y666 1083 aa6.93□□□□□ -1.3
CD44-215ENST00000525241 ADAMTS4O75173 837 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 SRFP11831 508 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 ATP2B1P20020 1258 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 PRKCQQ04759 706 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 NBPF9Q3BBW0 867 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 TNNI3KQ59H18 835 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 CDKAL1Q5VV42 579 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 NFXL1Q6ZNB6 911 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 BCL7CQ8WUZ0 217 aaPredicted RBP6.92□□□□□ -1.3
CD44-215ENST00000525241 HSPA12BQ96MM6 686 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 DUSP15Q9H1R2 295 aaPredicted RBP6.92□□□□□ -1.3
CD44-215ENST00000525241 SEMA3GQ9NS98 782 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 PCMTD2Q9NV79 361 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 CCDC39Q9UFE4 941 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 VAV3Q9UKW4 847 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 KCNH3Q9ULD8 1083 aa6.92□□□□□ -1.3
CD44-215ENST00000525241 BNIP3Q12983 259 aa6.91□□□□□ -1.3
CD44-215ENST00000525241 AOC3Q16853 763 aa6.91□□□□□ -1.3
CD44-215ENST00000525241 ARTNQ5T4W7 220 aa6.91□□□□□ -1.3
CD44-215ENST00000525241 TDRD10Q5VZ19 366 aaKnown RBP6.91□□□□□ -1.3
CD44-215ENST00000525241 WFDC3Q8IUB2 231 aa6.91□□□□□ -1.3
CD44-215ENST00000525241 MISP3Q96FF7 219 aa6.91□□□□□ -1.3
CD44-215ENST00000525241 PHAXQ9H814 394 aaKnown RBP6.91□□□□□ -1.3
CD44-215ENST00000525241 PCDHB10Q9UN67 800 aa6.91□□□□□ -1.3
CD44-215ENST00000525241 PITPNM2Q9BZ72 1349 aa6.91□□□□□ -1.3
CD44-215ENST00000525241 H3BS24 57 aa6.9□□□□□ -1.3
CD44-215ENST00000525241 SNW1Q13573 536 aaKnown RBP6.9□□□□□ -1.3
CD44-215ENST00000525241 AXDND1Q5T1B0 1012 aaPredicted RBP6.9□□□□□ -1.3
CD44-215ENST00000525241 SPRED2Q7Z698 418 aa6.9□□□□□ -1.3
CD44-215ENST00000525241 VSIG10LQ86VR7 867 aa6.9□□□□□ -1.3
CD44-215ENST00000525241 SREK1Q8WXA9 508 aaKnown RBP6.9□□□□□ -1.3
CD44-215ENST00000525241 HRASLS5Q96KN8 279 aa6.9□□□□□ -1.3
CD44-215ENST00000525241 GPR62Q9BZJ7 368 aa6.9□□□□□ -1.3
CD44-215ENST00000525241 MKRN2Q9H000 416 aaKnown RBP6.9□□□□□ -1.3
CD44-215ENST00000525241 ACTR10Q9NZ32 417 aa6.9□□□□□ -1.3
CD44-215ENST00000525241 SCO2A0A1W2PP80 73 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 SHISA3A0PJX4 238 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 WASH4PA8MWX3 477 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 SHOXO15266 292 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 KLF4O43474 513 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 TP53P04637 393 aaPredicted RBP6.89□□□□□ -1.31
CD44-215ENST00000525241 CD96P40200 585 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 AUHQ13825 339 aaKnown RBP6.89□□□□□ -1.31
CD44-215ENST00000525241 SF3A1Q15459 793 aaKnown RBP6.89□□□□□ -1.31
CD44-215ENST00000525241 BBS9Q3SYG4 887 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 ANKRD39Q53RE8 183 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 ANKS3Q6ZW76 656 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 THAP5Q7Z6K1 395 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 STK11IPQ8N1F8 1099 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 KLHL6Q8WZ60 621 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 DHX38Q92620 1227 aaKnown RBP6.89□□□□□ -1.31
CD44-215ENST00000525241 SMARCC1Q92922 1105 aaPredicted RBP6.89□□□□□ -1.31
CD44-215ENST00000525241 PRDM14Q9GZV8 571 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 ZSWIM5Q9P217 1185 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 SLC5A6Q9Y289 635 aa6.89□□□□□ -1.31
CD44-215ENST00000525241 STK10O94804 968 aaKnown RBP6.88□□□□□ -1.31
CD44-215ENST00000525241 SLC7A5Q01650 507 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 GNPTABQ3T906 1256 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 DCAF15Q66K64 600 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 ZNF574Q6ZN55 896 aaPredicted RBP6.88□□□□□ -1.31
CD44-215ENST00000525241 TMC3Q7Z5M5 1100 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 CCDC144CPQ8IYA2 1237 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 C7orf61Q8IZ16 206 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 HNRNPLLQ8WVV9 542 aaKnown RBP6.88□□□□□ -1.31
CD44-215ENST00000525241 ASB11Q8WXH4 323 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 UBE2FQ969M7 185 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 ARMC5Q96C12 935 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 ATP13A1Q9HD20 1204 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 ZFP64Q9NPA5 681 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 FAM86C1Q9NVL1 165 aa6.88□□□□□ -1.31
CD44-215ENST00000525241 WNT11O96014 354 aa6.87□□□□□ -1.31
CD44-215ENST00000525241 CD8BP10966 210 aa6.87□□□□□ -1.31
CD44-215ENST00000525241 GTF2F1P35269 517 aaKnown RBP eCLIP6.87□□□□□ -1.31
CD44-215ENST00000525241 RBL2Q08999 1139 aa6.87□□□□□ -1.31
CD44-215ENST00000525241 NMIQ13287 307 aaPredicted RBP6.87□□□□□ -1.31
CD44-215ENST00000525241 GAB4Q2WGN9 574 aa6.87□□□□□ -1.31
CD44-215ENST00000525241 VHLLQ6RSH7 139 aa6.87□□□□□ -1.31
CD44-215ENST00000525241 TSPYL5Q86VY4 417 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 171.4 ms