RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 CCDC152Q4G0S7 254 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 AGAP9Q5VTM2 703 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 MYSM1Q5VVJ2 828 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 PACS1Q6VY07 963 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 MMS22LQ6ZRQ5 1243 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 NIM1KQ8IY84 436 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 TEX11Q8IYF3 940 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 SYNE4Q8N205 404 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 TXLNBQ8N3L3 684 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 TRIML1Q8N9V2 468 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 ANKRD7Q92527 254 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 JAKMIP2Q96AA8 810 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 KLRG1Q96E93 195 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 SH3GL1Q99961 368 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 STK31Q9BXU1 1019 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 LRRCC1Q9C099 1032 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 ZNF277Q9NRM2 450 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-216ENST00000523088 MKS1Q9NXB0 559 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 SEL1LQ9UBV2 794 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 HACL1Q9UJ83 578 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 SQORQ9Y6N5 450 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 ADAMTSL1Q8N6G6 1762 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 ABCC4O15439 1325 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 DDNO94850 711 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CPP00450 1065 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 ERCC5P28715 1186 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 USP11P51784 963 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CSE1LP55060 971 aaKnown RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 GRAPQ13588 217 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CRYMQ14894 314 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 LONRF1Q17RB8 773 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 TSGA10IPQ3SY00 556 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 B4GALNT3Q6L9W6 998 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CPLX2Q6PUV4 134 aaKnown RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CCBE1Q6UXH8 406 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 RIC3Q7Z5B4 369 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 SKAP1Q86WV1 359 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 ANKRD18AQ8IVF6 992 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 SP8Q8IXZ3 490 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 KRT222Q8N1A0 295 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 RNF214Q8ND24 703 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 GRAPLQ8TC17 118 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 TEKT4Q8WW24 435 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 MAML1Q92585 1016 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 TRIM11Q96F44 468 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 SLC39A3Q9BRY0 314 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 ISCA1Q9BUE6 129 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 RTFDC1Q9BY42 306 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 TAF1DQ9H5J8 278 aaPredicted RBP8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CD248Q9HCU0 757 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CREBZFQ9NS37 354 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 TOMM22Q9NS69 142 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 CHMP5Q9NZZ3 219 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 POLG2Q9UHN1 485 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 TRPM7Q96QT4 1865 aa8.57□□□□□ -1.04
HDAC3-216ENST00000523088 POTECB2RU33 542 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 BOLA2-SMG1P6H3BVE0 249 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 MYO1CO00159 1063 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 PPIP5K2O43314 1243 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 ANXA1P04083 346 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 TPP2P29144 1249 aaPredicted RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 EPHX2P34913 555 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 TSPAN7P41732 249 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 HNRNPH2P55795 449 aaKnown RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 SF3B3Q15393 1217 aaKnown RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 SPDYCQ5MJ68 293 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 CEP135Q66GS9 1140 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 CCSAPQ6IQ19 270 aaPredicted RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 DPP8Q6V1X1 898 aaPredicted RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 RSPH3Q86UC2 560 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 FAM114A1Q8IWE2 563 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 STK11IPQ8N1F8 1099 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 ZNF710Q8N1W2 664 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 PAF1Q8N7H5 531 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 ZBTB38Q8NAP3 1195 aaPredicted RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 ZNF483Q8TF39 744 aaPredicted RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 ZFPM2Q8WW38 1151 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 SPOCK2Q92563 424 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 SCLT1Q96NL6 688 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 MPHOSPH6Q99547 160 aaKnown RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 XPO4Q9C0E2 1151 aaKnown RBP8.56□□□□□ -1.04
HDAC3-216ENST00000523088 NRDE2Q9H7Z3 1164 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 MRS2Q9HD23 443 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 SEPT10Q9P0V9 454 aa8.56□□□□□ -1.04
HDAC3-216ENST00000523088 ZNF541Q9H0D2 1346 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 TBKBP1A7MCY6 615 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 GOLGA6L19H0YKK7 550 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 PDLIM1O00151 329 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 SGTAO43765 313 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 S100BP04271 92 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 TRIM21P19474 475 aaKnown RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 VAMP1P23763 118 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 CASP2P42575 452 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 PAPOLAP51003 745 aaKnown RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 MNAT1P51948 309 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 PDE4BQ07343 736 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 TNIP1Q15025 636 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 ARHGEF6Q15052 776 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 KRT24Q2M2I5 525 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 SLC4A8Q2Y0W8 1093 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms