RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 TOP1P11387 765 aaKnown RBP17.1■□□□□ 0.33
BRCA1-223ENST00000494123 CPA1P15085 419 aa17.1■□□□□ 0.33
BRCA1-223ENST00000494123 RBM25P49756 843 aaKnown RBP17.1■□□□□ 0.33
BRCA1-223ENST00000494123 KIF23Q02241 960 aaPredicted RBP17.1■□□□□ 0.33
BRCA1-223ENST00000494123 SREBF2Q12772 1141 aa17.1■□□□□ 0.33
BRCA1-223ENST00000494123 FASTKD5Q7L8L6 764 aaKnown RBP17.1■□□□□ 0.33
BRCA1-223ENST00000494123 MKL1Q969V6 931 aa17.1■□□□□ 0.33
BRCA1-223ENST00000494123 KAT14Q9H8E8 782 aa17.1■□□□□ 0.33
BRCA1-223ENST00000494123 RPS6KB1P23443 525 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 COL9A3Q14050 684 aaPredicted RBP17.09■□□□□ 0.33
BRCA1-223ENST00000494123 SH3D19Q5HYK7 790 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 RCSD1Q6JBY9 416 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 RUFY3Q7L099 469 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 MS4A4AQ96JQ5 239 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 TCEANC2Q96MN5 208 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 TMEM47Q9BQJ4 181 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 LRRC2Q9BYS8 371 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 ZSWIM6Q9HCJ5 1215 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 SYNPO2Q9UMS6 1093 aa17.09■□□□□ 0.33
BRCA1-223ENST00000494123 LOC285556D6RIA3 1793 aa17.08■□□□□ 0.33
BRCA1-223ENST00000494123 MAP2K2P36507 400 aa17.08■□□□□ 0.32
BRCA1-223ENST00000494123 NOVP48745 357 aa17.08■□□□□ 0.32
BRCA1-223ENST00000494123 INHBEP58166 350 aa17.08■□□□□ 0.32
BRCA1-223ENST00000494123 EXOSC10Q01780 885 aaKnown RBP17.08■□□□□ 0.32
BRCA1-223ENST00000494123 DGKZQ13574 1117 aa17.08■□□□□ 0.32
BRCA1-223ENST00000494123 SEC23AQ15436 765 aa17.08■□□□□ 0.32
BRCA1-223ENST00000494123 PROCA1Q8NCQ7 364 aaPredicted RBP17.08■□□□□ 0.32
BRCA1-223ENST00000494123 UPF3BQ9BZI7 483 aaKnown RBP17.08■□□□□ 0.32
BRCA1-223ENST00000494123 VCPKMTQ9H867 229 aa17.08■□□□□ 0.32
BRCA1-223ENST00000494123 MTMR7Q9Y216 660 aa17.08■□□□□ 0.32
BRCA1-223ENST00000494123 SH2B2O14492 632 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-223ENST00000494123 NFXL1Q6ZNB6 911 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 REM2Q8IYK8 340 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-223ENST00000494123 SPICE1Q8N0Z3 855 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 TMTC2Q8N394 836 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 GMCL1P1Q8NEA9 526 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 IGDCC4Q8TDY8 1250 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 BRI3BPQ8WY22 251 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 ANKS1AQ92625 1134 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 LPAR1Q92633 364 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 TBC1D32Q96NH3 1257 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 ZIC5Q96T25 663 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 EMILIN3Q9NT22 766 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 CCDC69A6NI79 296 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 F5H6K3 240 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 KLRC3Q07444 240 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 OTUD7BQ6GQQ9 843 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 PNMA1Q8ND90 353 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 IL17RAQ96F46 866 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 C12orf42Q96LP6 360 aa17.07■□□□□ 0.32
BRCA1-223ENST00000494123 ISY1Q9ULR0 285 aaKnown RBP17.07■□□□□ 0.32
BRCA1-223ENST00000494123 THSD7BQ9C0I4 1608 aa17.06■□□□□ 0.32
BRCA1-223ENST00000494123 VCAM1P19320 739 aa17.06■□□□□ 0.32
BRCA1-223ENST00000494123 PABPC4Q13310 644 aaKnown RBP eCLIP17.06■□□□□ 0.32
BRCA1-223ENST00000494123 SLFN13Q68D06 897 aa17.06■□□□□ 0.32
BRCA1-223ENST00000494123 Q6ZUG5 572 aa17.06■□□□□ 0.32
BRCA1-223ENST00000494123 LY9Q9HBG7 655 aa17.06■□□□□ 0.32
BRCA1-223ENST00000494123 GPHNQ9NQX3 736 aaPredicted RBP17.06■□□□□ 0.32
BRCA1-223ENST00000494123 PDRG1Q9NUG6 133 aa17.06■□□□□ 0.32
BRCA1-223ENST00000494123 TESPA1A2RU30 521 aaPredicted RBP17.05■□□□□ 0.32
BRCA1-223ENST00000494123 WDR46O15213 610 aaKnown RBP17.05■□□□□ 0.32
BRCA1-223ENST00000494123 NDUFB10O96000 172 aa17.05■□□□□ 0.32
BRCA1-223ENST00000494123 LIFRP42702 1097 aa17.05■□□□□ 0.32
BRCA1-223ENST00000494123 TREML2Q5T2D2 321 aa17.05■□□□□ 0.32
BRCA1-223ENST00000494123 CHMP4CQ96CF2 233 aa17.05■□□□□ 0.32
BRCA1-223ENST00000494123 AGTPBP1Q9UPW5 1226 aa17.05■□□□□ 0.32
BRCA1-223ENST00000494123 BTBD19C9JJ37 291 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 SLC1A4P43007 532 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 TM4SF4P48230 202 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 MOGSQ13724 837 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 KIAA1755Q5JYT7 1200 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 CATIPQ7Z7H3 387 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 ANKRD23Q86SG2 305 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 TANGO6Q9C0B7 1094 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 RPAP3Q9H6T3 665 aaPredicted RBP17.04■□□□□ 0.32
BRCA1-223ENST00000494123 SENP2Q9HC62 589 aa17.04■□□□□ 0.32
BRCA1-223ENST00000494123 NEK4P51957 841 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 CCDC96Q2M329 555 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 FAM83BQ5T0W9 1011 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 SYNE3Q6ZMZ3 975 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 IFNL1Q8IU54 200 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 DCAF4Q8WV16 495 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 BRF1Q92994 677 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 GMCL1Q96IK5 515 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 NUP88Q99567 741 aaPredicted RBP17.03■□□□□ 0.32
BRCA1-223ENST00000494123 PTPN18Q99952 460 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 NAP1L2Q9ULW6 460 aaPredicted RBP17.03■□□□□ 0.32
BRCA1-223ENST00000494123 SLC12A7Q9Y666 1083 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L15C9J2P7 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L13C9JLJ4 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L11C9JVI0 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L18D6R9N7 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L22D6RA61 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L17D6RBQ6 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L19D6RCP7 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 USP17L20D6RJB6 530 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 PDHXO00330 501 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 IGF2BP3O00425 579 aaKnown RBP eCLIP17.03■□□□□ 0.32
BRCA1-223ENST00000494123 BMP3P12645 472 aa17.03■□□□□ 0.32
BRCA1-223ENST00000494123 OSBPP22059 807 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms