RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 RASGRP4Q8TDF6 673 aa7.57□□□□□ -1.2
HMGB1P13-201ENST00000406019 WASH4PA8MWX3 477 aa7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 H3BS24 57 aa7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 TAL1P17542 331 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 PLCL1Q15111 1095 aa7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 NLRC3Q7RTR2 1065 aa7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 ASPNQ9BXN1 380 aa7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 GPR62Q9BZJ7 368 aa7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 LMCD1Q9NZU5 365 aa7.56□□□□□ -1.2
HMGB1P13-201ENST00000406019 ESR1P03372 595 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 ACRP10323 421 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 NME1P15531 152 aaKnown RBP7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 SOX9P48436 509 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 SLC23A3Q6PIS1 610 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 FAM177A1Q8N128 213 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 RBBP8NLQ8NC74 664 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 LRRN4CLQ8ND94 238 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 CCSER2Q9H7U1 834 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 PRDM7Q9NQW5 492 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 C19orf73Q9NVV2 129 aa7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P13-201ENST00000406019 PAPLNO95428 1278 aa7.54□□□□□ -1.2
HMGB1P13-201ENST00000406019 IKZF1Q13422 519 aa7.54□□□□□ -1.2
HMGB1P13-201ENST00000406019 PHACTR4Q8IZ21 702 aa7.54□□□□□ -1.2
HMGB1P13-201ENST00000406019 SLC9A7Q96T83 725 aa7.54□□□□□ -1.2
HMGB1P13-201ENST00000406019 GMLQ99445 158 aa7.54□□□□□ -1.2
HMGB1P13-201ENST00000406019 ACBD3Q9H3P7 528 aa7.54□□□□□ -1.2
HMGB1P13-201ENST00000406019 PPP1R1BQ9UD71 204 aaPredicted RBP7.54□□□□□ -1.2
HMGB1P13-201ENST00000406019 RAG1P15918 1043 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 MCM4P33991 863 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 CCNFP41002 786 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 ZP2Q05996 745 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 MLECQ14165 292 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 LRRFIP1Q32MZ4 808 aaKnown RBP7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 NBPF12Q5TAG4 269 aaPredicted RBP7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 TMEM192Q8IY95 271 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 TAB3Q8N5C8 712 aaPredicted RBP7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 UBE2FQ969M7 185 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 PUS7Q96PZ0 661 aaKnown RBP7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 GINM1Q9NU53 330 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 PPT2Q9UMR5 302 aa7.53□□□□□ -1.2
HMGB1P13-201ENST00000406019 SHISA3A0PJX4 238 aa7.52□□□□□ -1.21
HMGB1P13-201ENST00000406019 GPRASP2Q96D09 838 aa7.52□□□□□ -1.21
HMGB1P13-201ENST00000406019 TANGO6Q9C0B7 1094 aa7.52□□□□□ -1.21
HMGB1P13-201ENST00000406019 CARS2Q9HA77 564 aaKnown RBP7.52□□□□□ -1.21
HMGB1P13-201ENST00000406019 CAPN10Q9HC96 672 aa7.52□□□□□ -1.21
HMGB1P13-201ENST00000406019 ZSWIM5Q9P217 1185 aa7.52□□□□□ -1.21
HMGB1P13-201ENST00000406019 IMPDH2P12268 514 aa7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 TNNI2P48788 182 aa7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 COL9A2Q14055 689 aaPredicted RBP7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 INTS3Q68E01 1043 aaKnown RBP7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 TMPRSS7Q7RTY8 843 aa7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 TSPYL5Q86VY4 417 aaPredicted RBP7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 FLAD1Q8NFF5 587 aa7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 PI4K2BQ8TCG2 481 aa7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 ARMC5Q96C12 935 aa7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 RC3H2Q9HBD1 1191 aaKnown RBP7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 CARMIL2Q6F5E8 1435 aa7.51□□□□□ -1.21
HMGB1P13-201ENST00000406019 GBP1P32455 592 aa7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 NBPF9Q3BBW0 867 aa7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 LSRQ86X29 649 aaPredicted RBP7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 SPATA32Q96LK8 384 aa7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 FMNL2Q96PY5 1086 aa7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 CTNND2Q9UQB3 1225 aa7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 ZNF281Q9Y2X9 895 aa7.5□□□□□ -1.21
HMGB1P13-201ENST00000406019 RNF4P78317 190 aa7.49□□□□□ -1.21
HMGB1P13-201ENST00000406019 SNW1Q13573 536 aaKnown RBP7.49□□□□□ -1.21
HMGB1P13-201ENST00000406019 ATG4DQ86TL0 474 aaPredicted RBP7.49□□□□□ -1.21
HMGB1P13-201ENST00000406019 HDAC8Q9BY41 377 aa7.49□□□□□ -1.21
HMGB1P13-201ENST00000406019 KCNH3Q9ULD8 1083 aa7.49□□□□□ -1.21
HMGB1P13-201ENST00000406019 EFR3BQ9Y2G0 817 aa7.49□□□□□ -1.21
HMGB1P13-201ENST00000406019 CADPSQ9ULU8 1353 aa7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 SHOXO15266 292 aa7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 JUNBP17275 347 aaPredicted RBP7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 CANXP27824 592 aaKnown RBP7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 TPP2P29144 1249 aaPredicted RBP7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 GNL2Q13823 731 aaKnown RBP7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 ZYXQ15942 572 aaKnown RBP7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 RUFY4Q6ZNE9 571 aa7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 DPH6Q7L8W6 267 aa7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 SLC6A18Q96N87 628 aa7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 TM9SF2Q99805 663 aa7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 TRIT1Q9H3H1 467 aaKnown RBP7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 SP110Q9HB58 689 aa7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.48□□□□□ -1.21
HMGB1P13-201ENST00000406019 ATP2B1P20020 1258 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 GIPRP48546 466 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 CCDC81Q6ZN84 652 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 TMC3Q7Z5M5 1100 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 PPFIBP1Q86W92 1011 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 SHDQ96IW2 340 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 ZNF512BQ96KM6 892 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 FERD3LQ96RJ6 166 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 KRTAP9-2Q9BYQ4 174 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 GPATCH2Q9NW75 528 aa7.47□□□□□ -1.21
HMGB1P13-201ENST00000406019 DNAJC25-GNG10A0A024R161 153 aa7.46□□□□□ -1.22
HMGB1P13-201ENST00000406019 C9IYK1 514 aa7.46□□□□□ -1.22
HMGB1P13-201ENST00000406019 SMARCA5O60264 1052 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P13-201ENST00000406019 CLEC3AO75596 197 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms