RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ZFYVE27Q5T4F4 411 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 GBP4Q96PP9 640 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 MRIQ9BWK5 157 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 YY1AP1Q9H869 796 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 ZFYP08048 801 aaPredicted RBP9.3□□□□□ -0.92
LIMS1-203ENST00000393310 STAG3L1P0CL83 205 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 NAPBQ9H115 298 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 GPR153Q6NV75 609 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 SEC63Q9UGP8 760 aaKnown RBP9.3□□□□□ -0.92
LIMS1-203ENST00000393310 PAPPAQ13219 1627 aa9.3□□□□□ -0.92
LIMS1-203ENST00000393310 KIF5CO60282 957 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 GET4Q7L5D6 327 aaPredicted RBP9.29□□□□□ -0.92
LIMS1-203ENST00000393310 PGAP2Q9UHJ9 254 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 ESPNB1AK53 854 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 KIF1CO43896 1103 aaKnown RBP9.29□□□□□ -0.92
LIMS1-203ENST00000393310 TSPY3P0CV98 308 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 TSPY8P0CW00 308 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 KCNA3P22001 575 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 MSL3Q8N5Y2 521 aaKnown RBP9.29□□□□□ -0.92
LIMS1-203ENST00000393310 CCDC94Q9BW85 323 aaPredicted RBP9.29□□□□□ -0.92
LIMS1-203ENST00000393310 GREM2Q9H772 168 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 NHSQ6T4R5 1651 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 ZNF536O15090 1300 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 KLRG2A4D1S0 409 aaPredicted RBP9.29□□□□□ -0.92
LIMS1-203ENST00000393310 CHL1O00533 1208 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 KCNQ3O43525 872 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 IRF5Q13568 498 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 UBAC1Q9BSL1 405 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 XPNPEP3Q9NQH7 507 aa9.29□□□□□ -0.92
LIMS1-203ENST00000393310 ZNF215Q9UL58 517 aaPredicted RBP9.29□□□□□ -0.92
LIMS1-203ENST00000393310 DMTNQ08495 405 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 NSMFQ6X4W1 530 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMS1-203ENST00000393310 SHCBP1Q8NEM2 672 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 SAMD11Q96NU1 681 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 NAP1L4Q99733 375 aaKnown RBP9.28□□□□□ -0.92
LIMS1-203ENST00000393310 BCL2L12Q9HB09 334 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 AMHP03971 560 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 GJA8P48165 433 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 HMGCS2P54868 508 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 ICA1Q05084 483 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 TIGD5Q53EQ6 642 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 DIAPH3Q9NSV4 1193 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 LRRC37A3O60309 1634 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 KDRP35968 1356 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 TSPY2A6NKD2 308 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 MINDY4BA8MYZ0 360 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 PQBP1O60828 265 aaKnown RBP9.28□□□□□ -0.92
LIMS1-203ENST00000393310 GYG1P46976 350 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 CBX1P83916 185 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 VGLL4Q14135 290 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 CPXCR1Q8N123 301 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 FAM193BQ96PV7 902 aaPredicted RBP9.28□□□□□ -0.92
LIMS1-203ENST00000393310 KANSL2Q9H9L4 492 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 RIC1Q4ADV7 1423 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 NEURL1BA8MQ27 555 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 MYL3P08590 195 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 EN2P19622 333 aaPredicted RBP9.28□□□□□ -0.92
LIMS1-203ENST00000393310 CPT1AP50416 773 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 GNASQ5JWF2 1037 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 DACT2Q5SW24 774 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 PPP2R2DQ66LE6 453 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 TTLL11Q8NHH1 800 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 FAM210AQ96ND0 272 aa9.28□□□□□ -0.92
LIMS1-203ENST00000393310 PDE8BO95263 885 aa9.27□□□□□ -0.92
LIMS1-203ENST00000393310 GNL2Q13823 731 aaKnown RBP9.27□□□□□ -0.92
LIMS1-203ENST00000393310 DBN1Q16643 649 aa9.27□□□□□ -0.92
LIMS1-203ENST00000393310 AZI2Q9H6S1 392 aa9.27□□□□□ -0.92
LIMS1-203ENST00000393310 SERPINB13Q9UIV8 391 aa9.27□□□□□ -0.92
LIMS1-203ENST00000393310 STXBP5LQ9Y2K9 1186 aa9.27□□□□□ -0.92
LIMS1-203ENST00000393310 DDX49Q9Y6V7 483 aaKnown RBP9.27□□□□□ -0.92
LIMS1-203ENST00000393310 PDE4DIPQ5VU43 2346 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 PHRF1Q9P1Y6 1649 aaKnown RBP9.27□□□□□ -0.93
LIMS1-203ENST00000393310 PIK3C2AO00443 1686 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 GOLGA6CA6NDK9 693 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 GOLGA6BA6NDN3 693 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 ZBTB7BO15156 539 aaPredicted RBP9.27□□□□□ -0.93
LIMS1-203ENST00000393310 GOLGA6DP0CG33 693 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 CDR1P51861 262 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 MDM2Q00987 491 aaPredicted RBP9.27□□□□□ -0.93
LIMS1-203ENST00000393310 NFXL1Q6ZNB6 911 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 EGFL6Q8IUX8 553 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 KCNV2Q8TDN2 545 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 JARID2Q92833 1246 aaPredicted RBP9.27□□□□□ -0.93
LIMS1-203ENST00000393310 TIFAQ96CG3 184 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 GOLGA6AQ9NYA3 693 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 POLLQ9UGP5 575 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 UBN2Q6ZU65 1347 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 MYOM1P52179 1685 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 XBP1P17861 261 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 CASTP20810 708 aaKnown RBP9.27□□□□□ -0.93
LIMS1-203ENST00000393310 EXOSC9Q06265 439 aaKnown RBP9.27□□□□□ -0.93
LIMS1-203ENST00000393310 TMEM67Q5HYA8 995 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 ZC3H14Q6PJT7 736 aaKnown RBP9.27□□□□□ -0.93
LIMS1-203ENST00000393310 TMEM179Q6ZVK1 233 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 FBXO22Q8NEZ5 403 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 HERVK_113Q902F9 699 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 FBXL21Q9UKT6 434 aa9.27□□□□□ -0.93
LIMS1-203ENST00000393310 UQCRHLA0A096LP55 91 aa9.26□□□□□ -0.93
LIMS1-203ENST00000393310 DKC1O60832 514 aaKnown RBP eCLIP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 124.9 ms