RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 RABEP2Q9H5N1 569 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 ABCA8O94911 1581 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 KLRF2D3W0D1 207 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 ZNF75DP51815 510 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 ARHGEF25Q86VW2 580 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 SCRN1Q12765 414 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 GLG1Q92896 1179 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 CSADQ9Y600 493 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 FAM47CQ5HY64 1035 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 CYP26C1Q6V0L0 522 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 PGBD1Q96JS3 809 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 TMEM63CQ9P1W3 806 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 ADCY9O60503 1353 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 SLFNL1Q499Z3 407 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 TYW1BQ6NUM6 668 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 MSANTD4Q8NCY6 345 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 ANO3Q9BYT9 981 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 HECW2Q9P2P5 1572 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 PRR36Q9H6K5 1346 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 PRKAB2O43741 272 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 EVCP57679 992 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 POLA2Q14181 598 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 PTPN21Q16825 1174 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 GPBP1Q86WP2 473 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 RNF169Q8NCN4 708 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 RASGRP4Q8TDF6 673 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 USP28Q96RU2 1077 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 SLF1Q9BQI6 1058 aa11.32□□□□□ -0.6
CHD3-201ENST00000330494 ZNF335Q9H4Z2 1342 aaPredicted RBP11.31□□□□□ -0.6
CHD3-201ENST00000330494 PDE8BO95263 885 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 PFKFB1P16118 471 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 CNGA1P29973 690 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 NCAPG2Q86XI2 1143 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 CEP57Q86XR8 500 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 BLIDQ8IZY5 108 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 LRRC45Q96CN5 670 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 TXNDC16Q9P2K2 825 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 ZMYM6O95789 1325 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 BTBD18B2RXH4 712 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 IVLP07476 585 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 ZBTB16Q05516 673 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 FANCBQ8NB91 859 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 ATF5Q9Y2D1 282 aaPredicted RBP11.31□□□□□ -0.6
CHD3-201ENST00000330494 CYP2D7A0A087X1C5 515 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 DAPK3O43293 454 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 TNNI1P19237 187 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 CARD10Q9BWT7 1032 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 MBD5Q9P267 1494 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 ATP2A1O14983 1001 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 SLC16A2P36021 539 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 MKRN3Q13064 507 aaKnown RBP11.31□□□□□ -0.6
CHD3-201ENST00000330494 NLRX1Q86UT6 975 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 RTEL1Q9NZ71 1219 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 PLEKHG1Q9ULL1 1385 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 ARAP3Q8WWN8 1544 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.31□□□□□ -0.6
CHD3-201ENST00000330494 HPDP32754 393 aaPredicted RBP11.31□□□□□ -0.6
CHD3-201ENST00000330494 IGBP1P78318 339 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 MIER3Q7Z3K6 550 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 PPANQ9NQ55 473 aaKnown RBP11.31□□□□□ -0.6
CHD3-201ENST00000330494 TTLL3Q9Y4R7 772 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 USP6P35125 1406 aa11.31□□□□□ -0.6
CHD3-201ENST00000330494 HGSO14964 777 aaPredicted RBP11.3□□□□□ -0.6
CHD3-201ENST00000330494 RAD17O75943 681 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 GDF11O95390 407 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 RRAGAQ7L523 313 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 LZTS2Q9BRK4 669 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 A0A087WWV3 80 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 E7EVH7 732 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 OPA1O60313 960 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 KLHL7Q8IXQ5 586 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 SMAP1Q8IYB5 467 aaPredicted RBP11.3□□□□□ -0.6
CHD3-201ENST00000330494 CARD6Q9BX69 1037 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 DDX25Q9UHL0 483 aaKnown RBP11.3□□□□□ -0.6
CHD3-201ENST00000330494 FAM169AQ9Y6X4 670 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 CD19P15391 556 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 SNAP25P60880 206 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 CYP4A11Q02928 519 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 CCDC77Q9BR77 488 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 PCDHA12Q9UN75 941 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 CDC42BPAQ5VT25 1732 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 SERPINB2P05120 415 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 ICA1Q05084 483 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 SPOUT1Q5T280 376 aaKnown RBP11.3□□□□□ -0.6
CHD3-201ENST00000330494 LSM14BQ9BX40 385 aaKnown RBP11.3□□□□□ -0.6
CHD3-201ENST00000330494 MLXIPQ9HAP2 919 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 ZSWIM6Q9HCJ5 1215 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 MTUS1Q9ULD2 1270 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 TRPC6Q9Y210 931 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 CAPN2P17655 700 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 U2AF2P26368 475 aaKnown RBP eCLIP11.3□□□□□ -0.6
CHD3-201ENST00000330494 NAPGQ99747 312 aaPredicted RBP11.3□□□□□ -0.6
CHD3-201ENST00000330494 EXOC7Q9UPT5 735 aa11.3□□□□□ -0.6
CHD3-201ENST00000330494 TMEM232C9JQI7 657 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 FLOT1O75955 427 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 CSPG5O95196 566 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 MYSM1Q5VVJ2 828 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 NOSTRINQ8IVI9 506 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 MLKLQ8NB16 471 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 FBF1Q8TES7 1133 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms