RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 PLIN4Q96Q06 1357 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 C19orf81C9J6K1 198 aa24.09■■□□□ 1.45
PTCD3-220ENST00000627371 FOXN1O15353 648 aa24.09■■□□□ 1.45
PTCD3-220ENST00000627371 TRPA1O75762 1119 aa24.09■■□□□ 1.45
PTCD3-220ENST00000627371 ANKRD23Q86SG2 305 aa24.09■■□□□ 1.45
PTCD3-220ENST00000627371 PROCA1Q8NCQ7 364 aaPredicted RBP24.09■■□□□ 1.45
PTCD3-220ENST00000627371 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.09■■□□□ 1.45
PTCD3-220ENST00000627371 CFHR5Q9BXR6 569 aa24.09■■□□□ 1.45
PTCD3-220ENST00000627371 TACC3Q9Y6A5 838 aa24.09■■□□□ 1.45
PTCD3-220ENST00000627371 ORC4O43929 436 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 PCP11498 1178 aaKnown RBP24.08■■□□□ 1.45
PTCD3-220ENST00000627371 HMGCS2P54868 508 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 ICA1Q05084 483 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 IMMTQ16891 758 aaKnown RBP24.08■■□□□ 1.45
PTCD3-220ENST00000627371 GADL1Q6ZQY3 521 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 KIAA1211Q6ZU35 1233 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 TBC1D10CQ8IV04 446 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 STAG1Q8WVM7 1258 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 KANSL2Q9H9L4 492 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 INCENPQ9NQS7 918 aa24.08■■□□□ 1.45
PTCD3-220ENST00000627371 U3KPZ7 1027 aaPredicted RBP24.08■■□□□ 1.45
PTCD3-220ENST00000627371 AKNAD1Q5T1N1 836 aa24.07■■□□□ 1.44
PTCD3-220ENST00000627371 GPAT2Q6NUI2 795 aa24.07■■□□□ 1.44
PTCD3-220ENST00000627371 CLEC10AQ8IUN9 316 aa24.07■■□□□ 1.44
PTCD3-220ENST00000627371 ACER1Q8TDN7 264 aa24.07■■□□□ 1.44
PTCD3-220ENST00000627371 MAP4K1Q92918 833 aa24.07■■□□□ 1.44
PTCD3-220ENST00000627371 FEZ1Q99689 392 aa24.07■■□□□ 1.44
PTCD3-220ENST00000627371 LSG1Q9H089 658 aaKnown RBP24.07■■□□□ 1.44
PTCD3-220ENST00000627371 KIAA1683Q9H0B3 1180 aa24.07■■□□□ 1.44
PTCD3-220ENST00000627371 RNF41Q9H4P4 317 aaPredicted RBP24.07■■□□□ 1.44
PTCD3-220ENST00000627371 TSPY3P0CV98 308 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 TSPY8P0CW00 308 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 DGKZQ13574 1117 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 MFSD6Q6ZSS7 791 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 NEDD1Q8NHV4 660 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 ARHGEF10LQ9HCE6 1279 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 TMOD4Q9NZQ9 345 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 AGTPBP1Q9UPW5 1226 aa24.06■■□□□ 1.44
PTCD3-220ENST00000627371 IGKV6D-41A0A0C4DH26 115 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 A0A1W2PRG0 241 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 HSPA8P11142 646 aaKnown RBP24.05■■□□□ 1.44
PTCD3-220ENST00000627371 CTCFP49711 727 aaPredicted RBP24.05■■□□□ 1.44
PTCD3-220ENST00000627371 USP14P54578 494 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 TFAP4Q01664 338 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 FAM47AQ5JRC9 791 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 USP17L2Q6R6M4 530 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 SIAH1Q8IUQ4 282 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 C12orf42Q96LP6 360 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 TSKSQ9UJT2 592 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 SLC45A1Q9Y2W3 748 aa24.05■■□□□ 1.44
PTCD3-220ENST00000627371 TSPY2A6NKD2 308 aa24.04■■□□□ 1.44
PTCD3-220ENST00000627371 PDHXO00330 501 aa24.04■■□□□ 1.44
PTCD3-220ENST00000627371 TAF1CQ15572 869 aaPredicted RBP24.04■■□□□ 1.44
PTCD3-220ENST00000627371 TREML2Q5T2D2 321 aa24.04■■□□□ 1.44
PTCD3-220ENST00000627371 SH2D4AQ9H788 454 aa24.04■■□□□ 1.44
PTCD3-220ENST00000627371 ANO2Q9NQ90 1003 aa24.04■■□□□ 1.44
PTCD3-220ENST00000627371 TOMM22Q9NS69 142 aa24.04■■□□□ 1.44
PTCD3-220ENST00000627371 EMILIN3Q9NT22 766 aa24.04■■□□□ 1.44
PTCD3-220ENST00000627371 RBM8AQ9Y5S9 174 aaKnown RBP24.04■■□□□ 1.44
PTCD3-220ENST00000627371 RANBP6O60518 1105 aaKnown RBP24.03■■□□□ 1.44
PTCD3-220ENST00000627371 TBC1D8O95759 1140 aa24.03■■□□□ 1.44
PTCD3-220ENST00000627371 EEF2P13639 858 aaKnown RBP24.03■■□□□ 1.44
PTCD3-220ENST00000627371 NT5C2P49902 561 aa24.03■■□□□ 1.44
PTCD3-220ENST00000627371 CRHR2Q13324 411 aa24.03■■□□□ 1.44
PTCD3-220ENST00000627371 ZYXQ15942 572 aaKnown RBP24.03■■□□□ 1.44
PTCD3-220ENST00000627371 RRP12Q5JTH9 1297 aaKnown RBP24.03■■□□□ 1.44
PTCD3-220ENST00000627371 CEP95Q96GE4 821 aa24.03■■□□□ 1.44
PTCD3-220ENST00000627371 TMX2Q9Y320 296 aa24.03■■□□□ 1.44
PTCD3-220ENST00000627371 CASP8AP2Q9UKL3 1982 aa24.03■■□□□ 1.44
PTCD3-220ENST00000627371 NEDD4P46934 1319 aa24.03■■□□□ 1.44
PTCD3-220ENST00000627371 CYP21A2P08686 494 aa24.02■■□□□ 1.44
PTCD3-220ENST00000627371 ZFYVE28Q9HCC9 887 aa24.02■■□□□ 1.44
PTCD3-220ENST00000627371 MTMR4Q9NYA4 1195 aa24.02■■□□□ 1.44
PTCD3-220ENST00000627371 NYAP2Q9P242 653 aa24.02■■□□□ 1.44
PTCD3-220ENST00000627371 ATP2B2Q01814 1243 aa24.01■■□□□ 1.43
PTCD3-220ENST00000627371 PABPC4Q13310 644 aaKnown RBP eCLIP24.01■■□□□ 1.43
PTCD3-220ENST00000627371 PARK7Q99497 189 aaKnown RBP24.01■■□□□ 1.43
PTCD3-220ENST00000627371 R3HDMLQ9H3Y0 253 aa24.01■■□□□ 1.43
PTCD3-220ENST00000627371 PARP14Q460N5 1801 aa24■■□□□ 1.43
PTCD3-220ENST00000627371 NOM1Q5C9Z4 860 aaKnown RBP24■■□□□ 1.43
PTCD3-220ENST00000627371 PPP4R3BQ5MIZ7 849 aa24■■□□□ 1.43
PTCD3-220ENST00000627371 ESR2Q92731 530 aa24■■□□□ 1.43
PTCD3-220ENST00000627371 PNMA3Q9UL41 463 aa24■■□□□ 1.43
PTCD3-220ENST00000627371 TTLL1O95922 423 aa23.99■■□□□ 1.43
PTCD3-220ENST00000627371 VCAM1P19320 739 aa23.99■■□□□ 1.43
PTCD3-220ENST00000627371 HOXA7P31268 230 aaPredicted RBP23.99■■□□□ 1.43
PTCD3-220ENST00000627371 LBX1P52954 281 aa23.99■■□□□ 1.43
PTCD3-220ENST00000627371 VCPKMTQ9H867 229 aa23.99■■□□□ 1.43
PTCD3-220ENST00000627371 CNNM2Q9H8M5 875 aa23.99■■□□□ 1.43
PTCD3-220ENST00000627371 IL17RBQ9NRM6 502 aa23.99■■□□□ 1.43
PTCD3-220ENST00000627371 TLR2O60603 784 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 NKX2-3Q8TAU0 364 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 LPAR1Q92633 364 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 MKL1Q969V6 931 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 KRT23Q9C075 422 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 TCP11L1Q9NUJ3 509 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 SYNPO2Q9UMS6 1093 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 ADGRA2Q96PE1 1338 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 RLFQ13129 1914 aa23.98■■□□□ 1.43
PTCD3-220ENST00000627371 GPR25O00155 361 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms