RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 TMEM94Q12767 1356 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 RTL9Q8NET4 1388 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.72□□□□□ -0.53
LIG1-220ENST00000601091 PDE8BO95263 885 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 IBSPP21815 317 aaPredicted RBP11.72□□□□□ -0.53
LIG1-220ENST00000601091 PNOCQ13519 176 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 GIGYF2Q6Y7W6 1299 aaKnown RBP11.72□□□□□ -0.53
LIG1-220ENST00000601091 STOX1Q6ZVD7 989 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 NFE2L3Q9Y4A8 694 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 MROH5Q6ZUA9 1318 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 MYO1BO43795 1136 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 KRT2P35908 639 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 UBA7P41226 1012 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 IRX1P78414 480 aaPredicted RBP11.72□□□□□ -0.53
LIG1-220ENST00000601091 KIF23Q02241 960 aaPredicted RBP11.72□□□□□ -0.53
LIG1-220ENST00000601091 SPAG1Q07617 926 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 PRPF4BQ13523 1007 aaKnown RBP11.72□□□□□ -0.53
LIG1-220ENST00000601091 KIAA1328Q86T90 577 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 CCDC148Q8NFR7 591 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 NOC3LQ8WTT2 800 aaKnown RBP11.72□□□□□ -0.53
LIG1-220ENST00000601091 GREM2Q9H772 168 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 ARFGAP3Q9NP61 516 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 ARHGAP6O43182 974 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 CHGBP05060 677 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 ERCC3P19447 782 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 STX17P56962 302 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 FOXO4P98177 505 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 ERCC6LQ2NKX8 1250 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 HHATQ5VTY9 493 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 RRAGBQ5VZM2 374 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 APOA5Q6Q788 366 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 PI16Q6UXB8 463 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 LEKR1Q6ZMV7 388 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 FMNL3Q8IVF7 1028 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 IFNL3Q8IZI9 196 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 CRNKL1Q9BZJ0 848 aaKnown RBP11.71□□□□□ -0.53
LIG1-220ENST00000601091 KCNJ14Q9UNX9 436 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 RFX5P48382 616 aaPredicted RBP11.71□□□□□ -0.53
LIG1-220ENST00000601091 EXOSC10Q01780 885 aaKnown RBP11.71□□□□□ -0.53
LIG1-220ENST00000601091 NOSTRINQ8IVI9 506 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 ZNF444Q8N0Y2 327 aaPredicted RBP11.71□□□□□ -0.53
LIG1-220ENST00000601091 FUCA2Q9BTY2 467 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 TSPYL2Q9H2G4 693 aaPredicted RBP11.71□□□□□ -0.53
LIG1-220ENST00000601091 ZNF287Q9HBT7 754 aa11.71□□□□□ -0.53
LIG1-220ENST00000601091 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.71□□□□□ -0.534e-7■■□□□ 14.5
LIG1-220ENST00000601091 POSTNQ15063 836 aa11.71□□□□□ -0.54
LIG1-220ENST00000601091 RMND1Q9NWS8 449 aa11.71□□□□□ -0.54
LIG1-220ENST00000601091 MAP3K15Q6ZN16 1313 aa11.71□□□□□ -0.54
LIG1-220ENST00000601091 WDR17Q8IZU2 1322 aa11.71□□□□□ -0.54
LIG1-220ENST00000601091 ZNF609O15014 1411 aa11.71□□□□□ -0.54
LIG1-220ENST00000601091 ADD2P35612 726 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 FLT3P36888 993 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 TRAF1Q13077 416 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 PPP2R5BQ15173 497 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 ATG9AQ7Z3C6 839 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 RUFY1Q96T51 708 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 KAT14Q9H8E8 782 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 BTG4Q9NY30 223 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 PSDA5PKW4 1024 aaPredicted RBP11.7□□□□□ -0.54
LIG1-220ENST00000601091 PPP6R2O75170 966 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 PHKA1P46020 1223 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 IQUBQ8NA54 791 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 GOLPH3LQ9H4A5 285 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 NUTM2BA6NNL0 878 aaPredicted RBP11.7□□□□□ -0.54
LIG1-220ENST00000601091 NUTM2EB1AL46 878 aaPredicted RBP11.7□□□□□ -0.54
LIG1-220ENST00000601091 BTBD18B2RXH4 712 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 NBPF26B4DH59 902 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 POTEB2H3BUK9 544 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 HSPA2P54652 639 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 ETF1P62495 437 aaKnown RBP11.7□□□□□ -0.54
LIG1-220ENST00000601091 NBPF14Q5TI25 921 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 NBPF15Q8N660 670 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 CLIC6Q96NY7 704 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 ASAP1Q9ULH1 1129 aa11.7□□□□□ -0.54
LIG1-220ENST00000601091 AKR1B15C9JRZ8 316 aaPredicted RBP11.69□□□□□ -0.54
LIG1-220ENST00000601091 IKBKBO14920 756 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 FMR1NBQ8N0W7 255 aaPredicted RBP11.69□□□□□ -0.54
LIG1-220ENST00000601091 BICD1Q96G01 975 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 EPC1Q9H2F5 836 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 KARSQ15046 597 aaKnown RBP11.69□□□□□ -0.54
LIG1-220ENST00000601091 PARP10Q53GL7 1025 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 CCDC102AQ96A19 550 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 CENPOQ9BU64 300 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 TCP11L1Q9NUJ3 509 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 FANCLQ9NW38 375 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 PCDHA5Q9Y5H7 936 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 V9GY48 417 aaPredicted RBP11.69□□□□□ -0.54
LIG1-220ENST00000601091 PALLDQ8WX93 1383 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 AP1G2O75843 785 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 ADAMTS2O95450 1211 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 SYCP1Q15431 976 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 EPS15P42566 896 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 GOLGA8FQ08AF8 430 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 GOLGA8DPQ0D2H9 430 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 MCM6Q14566 821 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 SAPCD2Q86UD0 394 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 LZTFL1Q9NQ48 299 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 GJB4Q9NTQ9 266 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 TMOD4Q9NZQ9 345 aa11.69□□□□□ -0.54
LIG1-220ENST00000601091 FBXO9Q9UK97 447 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms