RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 ARPP19P56211 112 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 TGFB2P61812 414 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 AOC3Q16853 763 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 DEFB115Q30KQ5 88 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 NCAPH2Q6IBW4 605 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 KRT25Q7Z3Z0 450 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 MICALL2Q8IY33 904 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 C7orf31Q8N865 590 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ARRDC4Q8NCT1 418 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PIGBQ92521 554 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 IPO9Q96P70 1041 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ARID3AQ99856 593 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 APOL6Q9BWW8 343 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 RRAGCQ9HB90 399 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 HELLSQ9NRZ9 838 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 IGSF1Q8N6C5 1336 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 FRMPD1Q5SYB0 1578 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 RGPD3A6NKT7 1758 aaPredicted RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 RGPD4Q7Z3J3 1758 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 FCER1AP12319 257 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 EEF2P13639 858 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 CD19P15391 556 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PRPHP41219 470 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PPP2R5AQ15172 486 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 RSRC2Q7L4I2 434 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 SESTD1Q86VW0 696 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 NBPF15Q8N660 670 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 C8orf58Q8NAV2 365 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 RBM46Q8TBY0 533 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 URGCPQ8TCY9 931 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ATP6V0A1Q93050 837 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 TMEM87BQ96K49 555 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 MEIS3Q99687 375 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 MAK16Q9BXY0 300 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 GBA2Q9HCG7 927 aaPredicted RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 SERPINB13Q9UIV8 391 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 DNM3Q9UQ16 869 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 FAM50BQ9Y247 325 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 A2ML1A8K2U0 1454 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ERBB3P21860 1342 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 A0A1W2PP64 1363 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 INSRP06213 1382 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 C3P01024 1663 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 CCL15-CCL14A0A0B4J2E2 113 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 DENND3A2RUS2 1198 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 NBPF26B4DH59 902 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 CAPN9O14815 690 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 MAP3K7O43318 606 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 PRPF40AO75400 957 aaKnown RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SASH1O94885 1247 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 TNNC2P02585 160 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 CHRNA5P30532 468 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 PLCB3Q01970 1234 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 EVX2Q03828 476 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 NONOQ15233 471 aaKnown RBP eCLIP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 CCL15Q16663 113 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 INF2Q27J81 1249 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 XKR9Q5GH70 373 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 CC2D1AQ6P1N0 951 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 EEPD1Q7L9B9 569 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 PPM1EQ8WY54 764 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 KIFAP3Q92845 792 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 FAM122AQ96E09 287 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 NUDT12Q9BQG2 462 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC113Q9H0I3 377 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 HESX1Q9UBX0 185 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ESYT2A0FGR8 921 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 FSD2A1L4K1 749 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ASB14A6NK59 587 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 EIF4E1BA6NMX2 242 aaKnown RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L10C9JJH3 530 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L12C9JPN9 530 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L21D6R901 530 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 DPEP1P16444 411 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 RPS12P25398 132 aaKnown RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 EPHX2P34913 555 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 KIF11P52732 1056 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 POLGP54098 1239 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 IFRD2Q12894 506 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SLC9C1Q4G0N8 1177 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 GPATCH4Q5T3I0 446 aaKnown RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L2Q6R6M4 530 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SND1Q7KZF4 910 aaKnown RBP eCLIP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SV2BQ7L1I2 683 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 DAAM2Q86T65 1068 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 RNF180Q86T96 592 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 BBS5Q8N3I7 341 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SLC7A3Q8WY07 619 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 GLT1D1Q96MS3 346 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 AMNQ9BXJ7 453 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ELP3Q9H9T3 547 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 RABGAP1Q9Y3P9 1069 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 FAM169AQ9Y6X4 670 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 ABCA9Q8IUA7 1624 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 RTL1A6NKG5 1358 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 SPDYE16A6NNV3 312 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 K7ELQ4 463 aaPredicted RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 CTAGE5O15320 804 aa3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 TOP1P11387 765 aaKnown RBP3.28□□□□□ -1.88
SMCHD1-203ENST00000577880 BMP3P12645 472 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms