RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 USP38Q8NB14 1042 aa19.96■□□□□ 0.79
CLK3-223ENST00000568488 TGFBRAP1Q8WUH2 860 aa19.96■□□□□ 0.79
CLK3-223ENST00000568488 FERMT2Q96AC1 680 aa19.96■□□□□ 0.79
CLK3-223ENST00000568488 RNPC3Q96LT9 517 aaKnown RBP19.96■□□□□ 0.79
CLK3-223ENST00000568488 COPRSQ9NQ92 184 aa19.96■□□□□ 0.79
CLK3-223ENST00000568488 PDLIM7Q9NR12 457 aa19.96■□□□□ 0.79
CLK3-223ENST00000568488 AATFQ9NY61 560 aaKnown RBP eCLIP19.96■□□□□ 0.79
CLK3-223ENST00000568488 LRP2BPQ9P2M1 347 aa19.96■□□□□ 0.79
CLK3-223ENST00000568488 TRIM43BA6NCK2 446 aa19.95■□□□□ 0.78
CLK3-223ENST00000568488 GRIN2CQ14957 1233 aa19.95■□□□□ 0.78
CLK3-223ENST00000568488 TRIM43Q96BQ3 446 aaPredicted RBP19.95■□□□□ 0.78
CLK3-223ENST00000568488 FEZ1Q99689 392 aa19.95■□□□□ 0.78
CLK3-223ENST00000568488 DNAJC18Q9H819 358 aa19.95■□□□□ 0.78
CLK3-223ENST00000568488 GINM1Q9NU53 330 aa19.95■□□□□ 0.78
CLK3-223ENST00000568488 PALD1Q9ULE6 856 aa19.95■□□□□ 0.78
CLK3-223ENST00000568488 TMEM265A0A087WTH1 108 aa19.94■□□□□ 0.78
CLK3-223ENST00000568488 BAG3O95817 575 aa19.94■□□□□ 0.78
CLK3-223ENST00000568488 ADCYAP1R1P41586 468 aa19.94■□□□□ 0.78
CLK3-223ENST00000568488 DPP9Q86TI2 863 aa19.94■□□□□ 0.78
CLK3-223ENST00000568488 PPM1EQ8WY54 764 aa19.94■□□□□ 0.78
CLK3-223ENST00000568488 HOXC6P09630 235 aa19.93■□□□□ 0.78
CLK3-223ENST00000568488 CYBAP13498 195 aa19.93■□□□□ 0.78
CLK3-223ENST00000568488 GRB14Q14449 540 aa19.93■□□□□ 0.78
CLK3-223ENST00000568488 BTBD7Q9P203 1132 aa19.93■□□□□ 0.78
CLK3-223ENST00000568488 SAP30BPQ9UHR5 308 aaKnown RBP19.93■□□□□ 0.78
CLK3-223ENST00000568488 GH2P01242 217 aa19.92■□□□□ 0.78
CLK3-223ENST00000568488 TLE2Q04725 743 aa19.92■□□□□ 0.78
CLK3-223ENST00000568488 NAA16Q6N069 864 aaPredicted RBP19.92■□□□□ 0.78
CLK3-223ENST00000568488 CATSPERGQ6ZRH7 1159 aa19.92■□□□□ 0.78
CLK3-223ENST00000568488 HDAC5Q9UQL6 1122 aa19.92■□□□□ 0.78
CLK3-223ENST00000568488 HLA-DOAP06340 250 aa19.91■□□□□ 0.78
CLK3-223ENST00000568488 PLCG2P16885 1265 aa19.91■□□□□ 0.78
CLK3-223ENST00000568488 EPHB4P54760 987 aa19.91■□□□□ 0.78
CLK3-223ENST00000568488 SNX17Q15036 470 aa19.91■□□□□ 0.78
CLK3-223ENST00000568488 METTL16Q86W50 562 aaKnown RBP19.91■□□□□ 0.78
CLK3-223ENST00000568488 MUC3AQ02505 3323 aa19.91■□□□□ 0.78
CLK3-223ENST00000568488 RLFQ13129 1914 aa19.9■□□□□ 0.78
CLK3-223ENST00000568488 ITGB8P26012 769 aa19.9■□□□□ 0.78
CLK3-223ENST00000568488 FAM122AQ96E09 287 aa19.9■□□□□ 0.78
CLK3-223ENST00000568488 C12orf42Q96LP6 360 aa19.9■□□□□ 0.78
CLK3-223ENST00000568488 TACC3Q9Y6A5 838 aa19.9■□□□□ 0.78
CLK3-223ENST00000568488 FLT1P17948 1338 aa19.9■□□□□ 0.78
CLK3-223ENST00000568488 SIPA1L1O43166 1804 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 SEPT4O43236 478 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 RAG1P15918 1043 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 DNAJB2P25686 324 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 PLA2G5P39877 138 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 RAB3GAP1Q15042 981 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 PRAMEF19Q5SWL8 479 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 ATF7IPQ6VMQ6 1270 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 ZNF576Q9H609 170 aa19.89■□□□□ 0.77
CLK3-223ENST00000568488 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.89■□□□□ 0.77
CLK3-223ENST00000568488 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.88■□□□□ 0.77
CLK3-223ENST00000568488 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.88■□□□□ 0.77
CLK3-223ENST00000568488 CLTBP09497 229 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 VCAM1P19320 739 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 ADORA2AP29274 412 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 MCAMP43121 646 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 USP14P54578 494 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 PPP4CP60510 307 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 LRRC41Q15345 812 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 FAM9BQ8IZU0 186 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 SNRKQ9NRH2 765 aa19.88■□□□□ 0.77
CLK3-223ENST00000568488 SRGAP3O43295 1099 aa19.87■□□□□ 0.77
CLK3-223ENST00000568488 ARID4AP29374 1257 aaPredicted RBP19.87■□□□□ 0.77
CLK3-223ENST00000568488 C1orf53Q5VUE5 145 aa19.87■□□□□ 0.77
CLK3-223ENST00000568488 OLFML2BQ68BL8 750 aa19.87■□□□□ 0.77
CLK3-223ENST00000568488 GAS2L1Q99501 681 aaPredicted RBP19.87■□□□□ 0.77
CLK3-223ENST00000568488 RPAP3Q9H6T3 665 aaPredicted RBP19.87■□□□□ 0.77
CLK3-223ENST00000568488 SMC4Q9NTJ3 1288 aa19.87■□□□□ 0.77
CLK3-223ENST00000568488 SPDYE16A6NNV3 312 aaPredicted RBP19.86■□□□□ 0.77
CLK3-223ENST00000568488 IGHA2P01877 340 aa19.86■□□□□ 0.77
CLK3-223ENST00000568488 FPGSQ05932 587 aa19.86■□□□□ 0.77
CLK3-223ENST00000568488 LBX2Q6XYB7 198 aa19.86■□□□□ 0.77
CLK3-223ENST00000568488 ACER1Q8TDN7 264 aa19.86■□□□□ 0.77
CLK3-223ENST00000568488 ATXN2LQ8WWM7 1075 aaKnown RBP19.86■□□□□ 0.77
CLK3-223ENST00000568488 TIFAQ96CG3 184 aa19.86■□□□□ 0.77
CLK3-223ENST00000568488 MOV10L1Q9BXT6 1211 aaKnown RBP19.86■□□□□ 0.77
CLK3-223ENST00000568488 TMEM39AQ9NV64 488 aa19.86■□□□□ 0.77
CLK3-223ENST00000568488 STRNO43815 780 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 PQBP1O60828 265 aaKnown RBP19.85■□□□□ 0.77
CLK3-223ENST00000568488 UQCRFS1P1P0C7P4 283 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 FAM47AQ5JRC9 791 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 ADGRA1Q86SQ6 560 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 ADAMTS19Q8TE59 1207 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 ASB2Q96Q27 587 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 MEIS3Q99687 375 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 KIAA1683Q9H0B3 1180 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 SLC5A4Q9NY91 659 aa19.85■□□□□ 0.77
CLK3-223ENST00000568488 COBLO75128 1261 aa19.84■□□□□ 0.77
CLK3-223ENST00000568488 DYNLL1P63167 89 aaKnown RBP19.84■□□□□ 0.77
CLK3-223ENST00000568488 MAP3K12Q12852 859 aa19.84■□□□□ 0.77
CLK3-223ENST00000568488 IL27Q8NEV9 243 aa19.84■□□□□ 0.77
CLK3-223ENST00000568488 UHRF1Q96T88 793 aaPredicted RBP19.84■□□□□ 0.77
CLK3-223ENST00000568488 THEGQ9P2T0 379 aa19.84■□□□□ 0.77
CLK3-223ENST00000568488 KIAA0355O15063 1070 aa19.83■□□□□ 0.77
CLK3-223ENST00000568488 ERCC3P19447 782 aa19.83■□□□□ 0.77
CLK3-223ENST00000568488 CCDC85BQ15834 202 aaPredicted RBP19.83■□□□□ 0.77
CLK3-223ENST00000568488 ABCB5Q2M3G0 1257 aa19.83■□□□□ 0.77
CLK3-223ENST00000568488 ALDH1L2Q3SY69 923 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms