RNA–Protein interactions for RNA: ENST00000565995.5

RNF40-208, Transcript of ring finger protein 40, humanhuman

TSL 4

Gene RNF40, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-208ENST00000565995 USP17L22D6RA61 530 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 USP17L17D6RBQ6 530 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 USP17L19D6RCP7 530 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 USP17L20D6RJB6 530 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 MSCO60682 206 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 GLRX3O76003 335 aaKnown RBP15.65■□□□□ 0.1
RNF40-208ENST00000565995 GDF11O95390 407 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 GNAI2P04899 355 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 PTPREP23469 700 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 CCNA1P78396 465 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 MDM2Q00987 491 aaPredicted RBP15.65■□□□□ 0.1
RNF40-208ENST00000565995 USP17L24Q0WX57 530 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 CATSPERGQ6ZRH7 1159 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 CCAR1Q8IX12 1150 aaKnown RBP15.65■□□□□ 0.1
RNF40-208ENST00000565995 GUCD1Q96NT3 240 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 COL25A1Q9BXS0 654 aaPredicted RBP15.65■□□□□ 0.1
RNF40-208ENST00000565995 FLRT1Q9NZU1 646 aa15.65■□□□□ 0.1
RNF40-208ENST00000565995 ATF7IPQ6VMQ6 1270 aa15.64■□□□□ 0.09
RNF40-208ENST00000565995 LPAR1Q92633 364 aa15.64■□□□□ 0.09
RNF40-208ENST00000565995 PAGR1Q9BTK6 254 aa15.64■□□□□ 0.09
RNF40-208ENST00000565995 EHD4Q9H223 541 aa15.64■□□□□ 0.09
RNF40-208ENST00000565995 HLA-DOAP06340 250 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 USP14P54578 494 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 POLA2Q14181 598 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 GRB14Q14449 540 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 TNNI3KQ59H18 835 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 CCDC158Q5M9N0 1113 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 MFSD14CQ5VZR4 134 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 TMED8Q6PL24 325 aaPredicted RBP15.63■□□□□ 0.09
RNF40-208ENST00000565995 CERS3Q8IU89 383 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.63■□□□□ 0.09
RNF40-208ENST00000565995 TRIM34Q9BYJ4 488 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 SENP6Q9GZR1 1112 aaPredicted RBP15.63■□□□□ 0.09
RNF40-208ENST00000565995 KIAA1683Q9H0B3 1180 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 SNRKQ9NRH2 765 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 DDX20Q9UHI6 824 aaKnown RBP15.63■□□□□ 0.09
RNF40-208ENST00000565995 FPGT-TNNI3KV9GXZ4 949 aa15.63■□□□□ 0.09
RNF40-208ENST00000565995 DNM1LO00429 736 aa15.62■□□□□ 0.09
RNF40-208ENST00000565995 GH2P01242 217 aa15.62■□□□□ 0.09
RNF40-208ENST00000565995 TTC39AQ5SRH9 613 aa15.62■□□□□ 0.09
RNF40-208ENST00000565995 MYH7P12883 1935 aa15.62■□□□□ 0.09
RNF40-208ENST00000565995 BAZ2AQ9UIF9 1905 aaKnown RBP15.62■□□□□ 0.09
RNF40-208ENST00000565995 IPO8O15397 1037 aaKnown RBP15.61■□□□□ 0.09
RNF40-208ENST00000565995 TRIM27P14373 513 aa15.61■□□□□ 0.09
RNF40-208ENST00000565995 SSH3Q8TE77 659 aa15.61■□□□□ 0.09
RNF40-208ENST00000565995 LBHD1Q9BQE6 289 aaPredicted RBP15.61■□□□□ 0.09
RNF40-208ENST00000565995 DBNDD2Q9BQY9 259 aa15.61■□□□□ 0.09
RNF40-208ENST00000565995 BTBD7Q9P203 1132 aa15.61■□□□□ 0.09
RNF40-208ENST00000565995 SERPINB13Q9UIV8 391 aa15.61■□□□□ 0.09
RNF40-208ENST00000565995 STRNO43815 780 aa15.6■□□□□ 0.09
RNF40-208ENST00000565995 CYBAP13498 195 aa15.6■□□□□ 0.09
RNF40-208ENST00000565995 DYNLL1P63167 89 aaKnown RBP15.6■□□□□ 0.09
RNF40-208ENST00000565995 ATP2B2Q01814 1243 aa15.6■□□□□ 0.09
RNF40-208ENST00000565995 TRPV1Q8NER1 839 aa15.6■□□□□ 0.09
RNF40-208ENST00000565995 NPLOC4Q8TAT6 608 aa15.6■□□□□ 0.09
RNF40-208ENST00000565995 PIH1D3Q9NQM4 214 aaKnown RBP15.6■□□□□ 0.09
RNF40-208ENST00000565995 SAP30BPQ9UHR5 308 aaKnown RBP15.6■□□□□ 0.09
RNF40-208ENST00000565995 SPDYE16A6NNV3 312 aaPredicted RBP15.59■□□□□ 0.09
RNF40-208ENST00000565995 VCAM1P19320 739 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 ZAP70P43403 619 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 ATP8B2P98198 1209 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 SNX17Q15036 470 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 C1orf53Q5VUE5 145 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 OLFML2BQ68BL8 750 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 ARRDC4Q8NCT1 418 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 NOP58Q9Y2X3 529 aaKnown RBP15.59■□□□□ 0.09
RNF40-208ENST00000565995 IVNS1ABPQ9Y6Y0 642 aa15.59■□□□□ 0.09
RNF40-208ENST00000565995 CYP7A1P22680 504 aa15.58■□□□□ 0.08
RNF40-208ENST00000565995 RTP1P59025 263 aa15.58■□□□□ 0.08
RNF40-208ENST00000565995 ABCB5Q2M3G0 1257 aa15.58■□□□□ 0.08
RNF40-208ENST00000565995 CERKLQ49MI3 558 aaPredicted RBP15.58■□□□□ 0.08
RNF40-208ENST00000565995 SLC39A5Q6ZMH5 540 aa15.58■□□□□ 0.08
RNF40-208ENST00000565995 TTC6Q86TZ1 520 aa15.58■□□□□ 0.08
RNF40-208ENST00000565995 CWC22Q9HCG8 908 aaKnown RBP15.58■□□□□ 0.08
RNF40-208ENST00000565995 MUC3AQ02505 3323 aa15.58■□□□□ 0.08
RNF40-208ENST00000565995 MYO9BQ13459 2157 aa15.58■□□□□ 0.08
RNF40-208ENST00000565995 CYP2C19P33261 490 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 GUCY1A2P33402 732 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 SHMT1P34896 483 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 ZNF697Q5TEC3 545 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 SHCBP1Q8NEM2 672 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 ACER1Q8TDN7 264 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 FEZ1Q99689 392 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 SEMA6BQ9H3T3 888 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 HOXC10Q9NYD6 342 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 PRKAG2Q9UGJ0 569 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 DBNLQ9UJU6 430 aaKnown RBP15.57■□□□□ 0.08
RNF40-208ENST00000565995 NDUFB9Q9Y6M9 179 aa15.57■□□□□ 0.08
RNF40-208ENST00000565995 CNGA1P29973 690 aa15.56■□□□□ 0.08
RNF40-208ENST00000565995 USP5P45974 858 aa15.56■□□□□ 0.08
RNF40-208ENST00000565995 ATN1P54259 1190 aaPredicted RBP15.56■□□□□ 0.08
RNF40-208ENST00000565995 GABPAQ06546 454 aa15.56■□□□□ 0.08
RNF40-208ENST00000565995 COG2Q14746 738 aa15.56■□□□□ 0.08
RNF40-208ENST00000565995 RAB3GAP1Q15042 981 aa15.56■□□□□ 0.08
RNF40-208ENST00000565995 SHHQ15465 462 aa15.56■□□□□ 0.08
RNF40-208ENST00000565995 ZYXQ15942 572 aaKnown RBP15.56■□□□□ 0.08
RNF40-208ENST00000565995 CDX2Q99626 313 aaPredicted RBP15.56■□□□□ 0.08
RNF40-208ENST00000565995 RPAP3Q9H6T3 665 aaPredicted RBP15.56■□□□□ 0.08
RNF40-208ENST00000565995 CABP5Q9NP86 173 aa15.56■□□□□ 0.08
RNF40-208ENST00000565995 TNNQ9UQP3 1299 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms