RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ZFYVE28Q9HCC9 887 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 CABP5Q9NP86 173 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 AGTPBP1Q9UPW5 1226 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 SLC45A1Q9Y2W3 748 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 ZMYM6O95789 1325 aa11.16□□□□□ -0.62
LDLR-211ENST00000560173 ADGRA2Q96PE1 1338 aa11.16□□□□□ -0.62
LDLR-211ENST00000560173 USP17L10C9JJH3 530 aa11.16□□□□□ -0.62
LDLR-211ENST00000560173 MPHOSPH10O00566 681 aaKnown RBP11.16□□□□□ -0.62
LDLR-211ENST00000560173 HSPD1P10809 573 aaKnown RBP11.16□□□□□ -0.62
LDLR-211ENST00000560173 RASA1P20936 1047 aa11.16□□□□□ -0.62
LDLR-211ENST00000560173 MFAP1P55081 439 aaKnown RBP11.16□□□□□ -0.62
LDLR-211ENST00000560173 PPARAQ07869 468 aa11.16□□□□□ -0.62
LDLR-211ENST00000560173 TREML2Q5T2D2 321 aa11.16□□□□□ -0.62
LDLR-211ENST00000560173 ACER1Q8TDN7 264 aa11.16□□□□□ -0.62
LDLR-211ENST00000560173 MYH8P13535 1937 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 C19orf81C9J6K1 198 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 TLR2O60603 784 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 FKTNO75072 461 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 CHMLP26374 656 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 CLEC10AQ8IUN9 316 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 STK11IPQ8N1F8 1099 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 PARK7Q99497 189 aaKnown RBP11.15□□□□□ -0.62
LDLR-211ENST00000560173 FEZ1Q99689 392 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.15□□□□□ -0.62
LDLR-211ENST00000560173 KIAA1683Q9H0B3 1180 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 IL25Q9H293 177 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 MKNK2Q9HBH9 465 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 EMILIN3Q9NT22 766 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 ANAPC4Q9UJX5 808 aa11.15□□□□□ -0.62
LDLR-211ENST00000560173 RAD50Q92878 1312 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 GREB1LQ9C091 1923 aaPredicted RBP11.14□□□□□ -0.63
LDLR-211ENST00000560173 A0A1W2PRG0 241 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 PRDM1O75626 825 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 FGAP02671 866 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 SLC3A2P08195 630 aaKnown RBP11.14□□□□□ -0.63
LDLR-211ENST00000560173 CYP2C8P10632 490 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 ICA1Q05084 483 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 BMP2KLQ5H9B9 411 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 USP17L2Q6R6M4 530 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 CTU1Q7Z7A3 348 aaKnown RBP11.14□□□□□ -0.63
LDLR-211ENST00000560173 SIAH1Q8IUQ4 282 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 C12orf42Q96LP6 360 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 ZNF287Q9HBT7 754 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 TMOD4Q9NZQ9 345 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.14□□□□□ -0.638e-10■□□□□ 8.4
LDLR-211ENST00000560173 PLIN4Q96Q06 1357 aa11.14□□□□□ -0.63
LDLR-211ENST00000560173 USP14P54578 494 aa11.13□□□□□ -0.63
LDLR-211ENST00000560173 CTDSPL2Q05D32 466 aa11.13□□□□□ -0.63
LDLR-211ENST00000560173 PDE4BQ07343 736 aa11.13□□□□□ -0.63
LDLR-211ENST00000560173 PABPC4Q13310 644 aaKnown RBP eCLIP11.13□□□□□ -0.63
LDLR-211ENST00000560173 ZYXQ15942 572 aaKnown RBP11.13□□□□□ -0.63
LDLR-211ENST00000560173 C17orf99Q6UX52 265 aa11.13□□□□□ -0.63
LDLR-211ENST00000560173 PNMA3Q9UL41 463 aa11.13□□□□□ -0.63
LDLR-211ENST00000560173 HPS5Q9UPZ3 1129 aa11.13□□□□□ -0.63
LDLR-211ENST00000560173 TACC3Q9Y6A5 838 aa11.13□□□□□ -0.63
LDLR-211ENST00000560173 IGKV6D-41A0A0C4DH26 115 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 ORC4O43929 436 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 FGRP09769 529 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 BCRP11274 1271 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 VCAM1P19320 739 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 HOXA7P31268 230 aaPredicted RBP11.12□□□□□ -0.63
LDLR-211ENST00000560173 SP3Q02447 781 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 HABP4Q5JVS0 413 aaKnown RBP11.12□□□□□ -0.63
LDLR-211ENST00000560173 RUFY2Q8WXA3 655 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 ERO1AQ96HE7 468 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 DSCC1Q9BVC3 393 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 NBPF3Q9H094 633 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 ASCC2Q9H1I8 757 aaPredicted RBP11.12□□□□□ -0.63
LDLR-211ENST00000560173 KANSL2Q9H9L4 492 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 ARHGEF10LQ9HCE6 1279 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 CPA4Q9UI42 421 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 TMX2Q9Y320 296 aa11.12□□□□□ -0.63
LDLR-211ENST00000560173 SGSM2O43147 1006 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 EEF2P13639 858 aaKnown RBP11.11□□□□□ -0.63
LDLR-211ENST00000560173 OSBPP22059 807 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 HAND2P61296 217 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 IRX3P78415 501 aaPredicted RBP11.11□□□□□ -0.63
LDLR-211ENST00000560173 CAP1Q01518 475 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 TBC1D10CQ8IV04 446 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 ZNF444Q8N0Y2 327 aaPredicted RBP11.11□□□□□ -0.63
LDLR-211ENST00000560173 NEDD1Q8NHV4 660 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 CD99L2Q8TCZ2 262 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 SMCR8Q8TEV9 937 aaPredicted RBP11.11□□□□□ -0.63
LDLR-211ENST00000560173 SH2D4AQ9H788 454 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 INCENPQ9NQS7 918 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 LAMA4Q16363 1823 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 MKI67P46013 3256 aaKnown RBP11.11□□□□□ -0.63
LDLR-211ENST00000560173 HTTP42858 3142 aa11.11□□□□□ -0.63
LDLR-211ENST00000560173 TSPY3P0CV98 308 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 TSPY8P0CW00 308 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 LACTBP83111 547 aaPredicted RBP11.1□□□□□ -0.63
LDLR-211ENST00000560173 TFAP4Q01664 338 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 ATP2B2Q01814 1243 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 FAM47AQ5JRC9 791 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 KIAA1755Q5JYT7 1200 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 STAG1Q8WVM7 1258 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 LPAR1Q92633 364 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 CEP95Q96GE4 821 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 VCPKMTQ9H867 229 aa11.1□□□□□ -0.63
LDLR-211ENST00000560173 MTMR4Q9NYA4 1195 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms