RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 USP42Q9H9J4 1324 aaKnown RBP9.78□□□□□ -0.84
SPG11-213ENST00000558988 PXDNLA1KZ92 1463 aa9.78□□□□□ -0.84
SPG11-213ENST00000558988 MRC1P22897 1456 aa9.78□□□□□ -0.84
SPG11-213ENST00000558988 NPC1L1Q9UHC9 1359 aa9.77□□□□□ -0.84
SPG11-213ENST00000558988 GNAT3A8MTJ3 354 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 ZNF865P0CJ78 1059 aaPredicted RBP9.77□□□□□ -0.85
SPG11-213ENST00000558988 ARID4AP29374 1257 aaPredicted RBP9.77□□□□□ -0.85
SPG11-213ENST00000558988 PPP2R1AP30153 589 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 DDR1Q08345 913 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 GAS2L2Q8NHY3 880 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 PHACTR3Q96KR7 559 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 MFSD14AQ96MC6 490 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 ZBTB1Q9Y2K1 713 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 KCPQ6ZWJ8 1503 aa9.77□□□□□ -0.85
SPG11-213ENST00000558988 C10orf71Q711Q0 1435 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 CYP19A1P11511 503 aaPredicted RBP9.76□□□□□ -0.85
SPG11-213ENST00000558988 BMP3P12645 472 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 CD68P34810 354 aaPredicted RBP9.76□□□□□ -0.85
SPG11-213ENST00000558988 CCDC102BQ68D86 513 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 KIAA1211Q6ZU35 1233 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 ARHGAP27Q6ZUM4 889 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 DEPDC4Q8N2C3 294 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 IL17REQ8NFR9 667 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 ZNF496Q96IT1 587 aaPredicted RBP9.76□□□□□ -0.85
SPG11-213ENST00000558988 C2orf49Q9BVC5 232 aaPredicted RBP9.76□□□□□ -0.85
SPG11-213ENST00000558988 TRIM33Q9UPN9 1127 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 NUDCQ9Y266 331 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 PPME1Q9Y570 386 aa9.76□□□□□ -0.85
SPG11-213ENST00000558988 SOS1Q07889 1333 aaPredicted RBP9.76□□□□□ -0.85
SPG11-213ENST00000558988 COL15A1P39059 1388 aa9.75□□□□□ -0.85
SPG11-213ENST00000558988 PRNPP04156 253 aa9.75□□□□□ -0.85
SPG11-213ENST00000558988 CHRNA5P30532 468 aa9.75□□□□□ -0.85
SPG11-213ENST00000558988 TGFB2P61812 414 aa9.75□□□□□ -0.85
SPG11-213ENST00000558988 MCM10Q7L590 875 aa9.75□□□□□ -0.85
SPG11-213ENST00000558988 COL26A1Q96A83 441 aa9.75□□□□□ -0.85
SPG11-213ENST00000558988 TLR7Q9NYK1 1049 aaKnown RBP9.75□□□□□ -0.85
SPG11-213ENST00000558988 LEMD3Q9Y2U8 911 aa9.75□□□□□ -0.85
SPG11-213ENST00000558988 LINC01387J3KSC0 135 aa9.74□□□□□ -0.85
SPG11-213ENST00000558988 KCNQ3O43525 872 aa9.74□□□□□ -0.85
SPG11-213ENST00000558988 STARD3NLO95772 234 aa9.74□□□□□ -0.85
SPG11-213ENST00000558988 SOX11P35716 441 aa9.74□□□□□ -0.85
SPG11-213ENST00000558988 PIP4K2AP48426 406 aaPredicted RBP9.74□□□□□ -0.85
SPG11-213ENST00000558988 IDH3AP50213 366 aa9.74□□□□□ -0.85
SPG11-213ENST00000558988 NPM2Q86SE8 214 aaKnown RBP9.74□□□□□ -0.85
SPG11-213ENST00000558988 RTF1Q92541 710 aaKnown RBP9.74□□□□□ -0.85
SPG11-213ENST00000558988 KIF13BQ9NQT8 1826 aa9.74□□□□□ -0.85
SPG11-213ENST00000558988 KIAA1551Q9HCM1 1747 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 POLRMTO00411 1230 aaKnown RBP9.73□□□□□ -0.85
SPG11-213ENST00000558988 NPHP1O15259 732 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 GHRHP01286 108 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 DCTN1Q14203 1278 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 NFIXQ14938 502 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 NEUROD2Q15784 382 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 WASHC4Q2M389 1173 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 ZNF790Q6PG37 636 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 VSIG10LQ86VR7 867 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 TSEN2Q8NCE0 465 aaKnown RBP9.73□□□□□ -0.85
SPG11-213ENST00000558988 MUC3BQ9H195 1237 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 NARFQ9UHQ1 456 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 ADAMTS7Q9UKP4 1686 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 HEG1Q9ULI3 1381 aa9.73□□□□□ -0.85
SPG11-213ENST00000558988 PAPLNO95428 1278 aa9.72□□□□□ -0.85
SPG11-213ENST00000558988 NEFMP07197 916 aa9.72□□□□□ -0.85
SPG11-213ENST00000558988 FOSL1P15407 271 aa9.72□□□□□ -0.85
SPG11-213ENST00000558988 RTN1Q16799 776 aa9.72□□□□□ -0.85
SPG11-213ENST00000558988 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.72□□□□□ -0.85
SPG11-213ENST00000558988 STAG2Q8N3U4 1231 aa9.72□□□□□ -0.85
SPG11-213ENST00000558988 NSUN5Q96P11 429 aaKnown RBP9.72□□□□□ -0.85
SPG11-213ENST00000558988 UBR2Q8IWV8 1755 aa9.72□□□□□ -0.85
SPG11-213ENST00000558988 A1BGP04217 495 aa9.71□□□□□ -0.86
SPG11-213ENST00000558988 SERPINB2P05120 415 aa9.71□□□□□ -0.86
SPG11-213ENST00000558988 ABL2P42684 1182 aa9.71□□□□□ -0.86
SPG11-213ENST00000558988 DALRD3Q5D0E6 543 aaKnown RBP9.71□□□□□ -0.86
SPG11-213ENST00000558988 TXNDC11Q6PKC3 985 aa9.71□□□□□ -0.86
SPG11-213ENST00000558988 GDPD2Q9HCC8 539 aa9.71□□□□□ -0.86
SPG11-213ENST00000558988 C11orf16Q9NQ32 467 aa9.71□□□□□ -0.86
SPG11-213ENST00000558988 ADCY9O60503 1353 aa9.71□□□□□ -0.86
SPG11-213ENST00000558988 A0A087WZG4 1122 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 PRAMEF22A3QJZ6 481 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 M0R2N6 131 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 TM4SF5O14894 197 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 KCNA3P22001 575 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 TM4SF1P30408 202 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 C9orf131Q5VYM1 1079 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 TBC1D9BQ66K14 1250 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 TRIM50Q86XT4 487 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 MIS18AQ9NYP9 233 aa9.7□□□□□ -0.86
SPG11-213ENST00000558988 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.7□□□□□ -0.86
SPG11-213ENST00000558988 SIPA1L3O60292 1781 aaPredicted RBP9.7□□□□□ -0.86
SPG11-213ENST00000558988 AFDNP55196 1824 aaKnown RBP9.7□□□□□ -0.86
SPG11-213ENST00000558988 SART1O43290 800 aaKnown RBP9.69□□□□□ -0.86
SPG11-213ENST00000558988 BRCA1P38398 1863 aaKnown RBP9.69□□□□□ -0.86
SPG11-213ENST00000558988 EIF5P55010 431 aaKnown RBP9.69□□□□□ -0.86
SPG11-213ENST00000558988 DUOXA2Q1HG44 320 aa9.69□□□□□ -0.86
SPG11-213ENST00000558988 C2CD5Q86YS7 1000 aa9.69□□□□□ -0.86
SPG11-213ENST00000558988 CARMIL3Q8ND23 1372 aa9.69□□□□□ -0.86
SPG11-213ENST00000558988 CEMIPQ8WUJ3 1361 aa9.69□□□□□ -0.86
SPG11-213ENST00000558988 THUMPD2Q9BTF0 503 aaKnown RBP9.69□□□□□ -0.86
SPG11-213ENST00000558988 TEX13AQ9BXU3 409 aaPredicted RBP9.69□□□□□ -0.86
SPG11-213ENST00000558988 RNF181Q9P0P0 153 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms