RNA–Protein interactions for RNA: ENST00000549472.1

ERBB3-210, Transcript of erb-b2 receptor tyrosine kinase 3, human

TSL 5

Gene ERBB3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB3-210	ENST00000549472	USP48	Q86UV5	1035 aa		13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	SLC44A5	Q8NCS7	719 aa		13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	CTCFL	Q8NI51	663 aa	Predicted RBP	13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	CHAMP1	Q96JM3	812 aa		13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	ALG1	Q9BT22	464 aa		13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	KAT14	Q9H8E8	782 aa		13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.81	□□□□□ -0.2
ERBB3-210	ENST00000549472	MYO1B	O43795	1136 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	NMT2	O60551	498 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	LMOD1	P29536	600 aa	Predicted RBP	13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	KIF5B	P33176	963 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	BRAP	Q7Z569	592 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	GPC2	Q8N158	579 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	MTMR14	Q8NCE2	650 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	PHKB	Q93100	1093 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	SLC26A6	Q9BXS9	759 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	TMOD2	Q9NZR1	351 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	CFAP45	Q9UL16	551 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472	ATRNL1	Q5VV63	1379 aa		13.8	□□□□□ -0.2
ERBB3-210	ENST00000549472		H7C1D1	291 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	PRPF3	O43395	683 aa	Known RBP	13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	UBE2H	P62256	183 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	FUT2	Q10981	343 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	NFIA	Q12857	509 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	TRIM29	Q14134	588 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	DLGAP5	Q15398	846 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	PPP4R3B	Q5MIZ7	849 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	TMTC3	Q6ZXV5	915 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	PNMA1	Q8ND90	353 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	DPF2	Q92785	391 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	CCDC17	Q96LX7	622 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	ZNF396	Q96N95	335 aa	Predicted RBP	13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	RBM27	Q9P2N5	1060 aa	Known RBP	13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	FAM198A	Q9UFP1	575 aa		13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	DICER1	Q9UPY3	1922 aa	Known RBP	13.79	□□□□□ -0.2
ERBB3-210	ENST00000549472	SPDYE2B	A6NHP3	402 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	FIBP	O43427	364 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	PPFIA3	O75145	1194 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	SPDYE6	P0CI01	402 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	GNAQ	P50148	359 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	AKAP17A	Q02040	695 aa	Known RBP	13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	KIF23	Q02241	960 aa	Predicted RBP	13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	GRM4	Q14833	912 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	KRT40	Q6A162	431 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	METTL16	Q86W50	562 aa	Known RBP	13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	GPT2	Q8TD30	523 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	GDPD2	Q9HCC8	539 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	PI4KB	Q9UBF8	816 aa		13.78	□□□□□ -0.2
ERBB3-210	ENST00000549472	IGKV6D-41	A0A0C4DH26	115 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	SBF1	O95248	1867 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	TOP1	P11387	765 aa	Known RBP	13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	XBP1	P17861	261 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	SHMT1	P34896	483 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	FOSB	P53539	338 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	GUCY1B3	Q02153	619 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	FKBP1C	Q5VVH2	108 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	FAM173B	Q6P4H8	233 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	CNTNAP5	Q8WYK1	1306 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	PRMT6	Q96LA8	375 aa	Predicted RBP	13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	SPATA32	Q96LK8	384 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	TMEM47	Q9BQJ4	181 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	TDRD3	Q9H7E2	651 aa	Known RBP	13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	ISY1	Q9ULR0	285 aa	Known RBP	13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	STX8	Q9UNK0	236 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	PCDHAC2	Q9Y5I4	1007 aa		13.77	□□□□□ -0.21
ERBB3-210	ENST00000549472	U2AF2	P26368	475 aa	Known RBP eCLIP	13.76	□□□□□ -0.21	6e-13	■■□□□ 11.5
ERBB3-210	ENST00000549472	GMPS	P49915	693 aa	Predicted RBP	13.76	□□□□□ -0.21
ERBB3-210	ENST00000549472	LEO1	Q8WVC0	666 aa	Predicted RBP	13.76	□□□□□ -0.21
ERBB3-210	ENST00000549472	SYAP1	Q96A49	352 aa	Predicted RBP	13.76	□□□□□ -0.21
ERBB3-210	ENST00000549472	CEP95	Q96GE4	821 aa		13.76	□□□□□ -0.21
ERBB3-210	ENST00000549472	AIFM3	Q96NN9	605 aa		13.76	□□□□□ -0.21
ERBB3-210	ENST00000549472	LZTS2	Q9BRK4	669 aa		13.76	□□□□□ -0.21
ERBB3-210	ENST00000549472	ZNF541	Q9H0D2	1346 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	MYH4	Q9Y623	1939 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	DDTL	A6NHG4	134 aa	Predicted RBP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	GADD45B	O75293	160 aa	Predicted RBP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	PLEKHA8P1	O95397	391 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	MMP1	P03956	469 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	SMARCA1	P28370	1054 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	CACNB3	P54284	484 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	SAFB	Q15424	915 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	PKN1	Q16512	942 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	SPDYE2	Q495Y8	402 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	MYSM1	Q5VVJ2	828 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	OTUD7B	Q6GQQ9	843 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	TATDN1	Q6P1N9	297 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	ZFPM1	Q8IX07	1006 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	MICALL2	Q8IY33	904 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	FAM177A1	Q8N128	213 aa	Predicted RBP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	SRBD1	Q8N5C6	995 aa	Known RBP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	ZBED3	Q96IU2	234 aa	Predicted RBP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	MTMR4	Q9NYA4	1195 aa		13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	CNOT7	Q9UIV1	285 aa	Known RBP	13.75	□□□□□ -0.21
ERBB3-210	ENST00000549472	RCOR1	Q9UKL0	485 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms