RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SLC4A10Q6U841 1118 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 XKR5Q6UX68 686 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 VPS37DQ86XT2 251 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 ANKRD13AQ8IZ07 590 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 TTC5Q8N0Z6 440 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 TTC16Q8NEE8 873 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 EPS8L3Q8TE67 593 aaKnown RBP5.18□□□□□ -1.58
CD44-226ENST00000527889 RHBDD1Q8TEB9 315 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 NLRP3Q96P20 1036 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 ZSCAN10Q96SZ4 725 aaPredicted RBP5.18□□□□□ -1.58
CD44-226ENST00000527889 DMGDHQ9UI17 866 aaKnown RBP5.18□□□□□ -1.58
CD44-226ENST00000527889 DDX19BQ9UMR2 479 aa5.18□□□□□ -1.58
CD44-226ENST00000527889 TNS1Q9HBL0 1735 aaKnown RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 BCL9O00512 1426 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ATP10DQ9P241 1426 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 IGHDP01880 384 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ATF4P18848 351 aaPredicted RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 VEGFBP49765 207 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 RGS19P49795 217 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 NFX1Q12986 1120 aaKnown RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 VPS72Q15906 364 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 EZH2Q15910 746 aaKnown RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 LCE2AQ5TA79 106 aaPredicted RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 INTS3Q68E01 1043 aaKnown RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 SDE2Q6IQ49 451 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ERMP1Q7Z2K6 904 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 CERS3Q8IU89 383 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 MARCH10Q8NA82 808 aaPredicted RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 PIGBQ92521 554 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 SYTL4Q96C24 671 aaPredicted RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 ACSBG1Q96GR2 724 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 FMNL2Q96PY5 1086 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 SYT17Q9BSW7 474 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ZSWIM4Q9H7M6 989 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ZFYVE28Q9HCC9 887 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ZBTB40Q9NUA8 1239 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 TMOD3Q9NYL9 352 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 FAM8A1Q9UBU6 413 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ASAP1Q9ULH1 1129 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 THRAP3Q9Y2W1 955 aaKnown RBP5.17□□□□□ -1.58
CD44-226ENST00000527889 USP16Q9Y5T5 823 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 SCN7AQ01118 1682 aa5.17□□□□□ -1.58
CD44-226ENST00000527889 ADCY9O60503 1353 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 STK10O94804 968 aaKnown RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 SNRPA1P09661 255 aaKnown RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 USP17L7P0C7H9 530 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 MYL6BP14649 208 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 RNF144AP50876 292 aaPredicted RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 AIMP1Q12904 312 aaKnown RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 PAK2Q13177 524 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 HIF1AQ16665 826 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.16□□□□□ -1.58
CD44-226ENST00000527889 IER5Q5VY09 327 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 TMEM214Q6NUQ4 689 aaKnown RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 CENPQQ7L2Z9 268 aaPredicted RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 NLGN1Q8N2Q7 840 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 ZNF280CQ8ND82 737 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 RHPN1Q8TCX5 695 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 SNX29Q8TEQ0 813 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 SUSD3Q96L08 255 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 MEIS3Q99687 375 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.16□□□□□ -1.58
CD44-226ENST00000527889 GRIP2Q9C0E4 1043 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 OSBPL2Q9H1P3 480 aa5.16□□□□□ -1.58
CD44-226ENST00000527889 DDX21Q9NR30 783 aaKnown RBP eCLIP5.16□□□□□ -1.58
CD44-226ENST00000527889 DBF4Q9UBU7 674 aaPredicted RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 TNRC18O15417 2968 aaPredicted RBP5.16□□□□□ -1.58
CD44-226ENST00000527889 AKAP11Q9UKA4 1901 aa5.15□□□□□ -1.58
CD44-226ENST00000527889 PI4KAP2A4QPH2 592 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 TERTO14746 1132 aaKnown RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 A1BGP04217 495 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 RHOQP17081 205 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 PLA2G4AP47712 749 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 RGS3P49796 1198 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 IDH3AP50213 366 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 CCT4P50991 539 aaKnown RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 PTSQ03393 145 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 TRIP4Q15650 581 aaPredicted RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 C4orf17Q53FE4 359 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 EGFLAMQ63HQ2 1017 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 PDE12Q6L8Q7 609 aaKnown RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 ZNF746Q6NUN9 644 aaPredicted RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 PI4KAP1Q8N8J0 262 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 ZNF526Q8TF50 670 aaPredicted RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 XAGE3Q8WTP9 111 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 DNAAF4Q8WXU2 420 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 GPRASP2Q96D09 838 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 RWDD1Q9H446 243 aaPredicted RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 CWC22Q9HCG8 908 aaKnown RBP5.15□□□□□ -1.59
CD44-226ENST00000527889 COPRSQ9NQ92 184 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 ATG3Q9NT62 314 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 HYPKQ9NX55 129 aa5.15□□□□□ -1.59
CD44-226ENST00000527889 COL24A1Q17RW2 1714 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 LAMA4Q16363 1823 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 CCDC88AQ3V6T2 1871 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 H3BM21 787 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 PTMSP20962 102 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 GTF2E1P29083 439 aaPredicted RBP5.14□□□□□ -1.59
CD44-226ENST00000527889 INPP5BP32019 993 aa5.14□□□□□ -1.59
CD44-226ENST00000527889 GPC1P35052 558 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms